| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1088528 | 118 (1.030) | 7 (0.060) | 6/232 | NT | 5.9% | intergenic (+19/‑235) | pmbA/PP_0943 | regulatory protease/hypothetical protein |
| ? | NC_002947 | = 1088617 | 113 (1.040) | intergenic (+108/‑146) | pmbA/PP_0943 | regulatory protease/hypothetical protein | |||||
AGGAAGTCACCATCGCCGGAAACATGAAGGACATGTTCCAGCAGATTGTCGCGATCGGTAGCGATCTTGAAACCCGTAGCAATATTCATACGGGCTCGGTGTTGATCGAGCGGATGACCGTTGCTGGTAGCTGATCTTTAGCCTGCGCCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1088376‑1088528‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggccTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGTGTCCAACCCCGATGTACGTCCACCACCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGGCTAAAGATCAGCTACCAGCAACGGTCATCCGCTCGATCAACACC < NC_002947/1088617‑1088473 AGGAAGTCACCATCGCCGGAAACATGAAGGACATGTTCCAGCAGATTGTCGCGATCGGTAGCGATCTTGAAACCCGTAGCAATATTCATACGGGCTCGGTGTTGATCGAGCGGATGACCGTTGCTGGTAGCTGATCTTTAGCCTGCGCCG > 1:1563535/1‑150AGGAAGTCACCATCGCCGGAAACATGAAGGACATGTTCCAGCAGATTGTCGCGATCGGTAGCGATCTTGAAACCCGTAGCAATATTCATACGGGCTCGGTGTTGATCGAGCGGATGACCGTTGCTGGTAGCTGATCTTTAGCCTGCGCCG > 1:2084140/1‑150AGGAAGTCACCATCGCCGGAAACATGAAGGACATGTTCCAGCAGATTGTCGCGATCGGTAGCGATCTTGAAACCCGTAGCAATATTCATACGGGCTCGGTGTTGATCGAGCGGATGACCGTTGCTGGTAGCTGATCTTTAGCCTGCGCCG > 1:3067905/1‑150 GGAAGTCACCATCGCCGGAAACATGAAGGACATGTTCCAGCAGATTGTCGCGATCGGTAGCGATCTTGAAACCCGTAGCAATATTCATACGGGCTCGGTGTTGATCGAGCGGATGACCGTTGCTGGTAGCTGATCTTTAGCCTGCGCCGG < 1:1117374/150‑1 GAAGTCACCATCGCCGGAAACATGAAGGACATGTTCCAGCAGATTGTCGCGATCGGTAGCGATCTTGAAACCCGTAGCAATATTCATACGGGCTCGGTGTTGATCGAGCGGATGACCGTTGCTGGTAGCTGATCTTTAGCCTGCGCCGGC < 1:197589/150‑1 AAGTCACCATCGCCGGAAACATGAAGGACATGTTCCAGCAGATTGTCGCGATCGGTAGCGATCTTGAAACCCGTAGCAATATTCATACGGGCTCGGTGTTGATCGAGCGGATGACCGTTGCTGGTAGCTGATCTTTAGCCTGCGCCGGCC > 2:724491/1‑150 GAAACCCGTAGCAATATTCATACGGGCTCGGTGTTGATCGAGCGGATGACCGTTGCTGGTAGCTGATCTTTAGCCTGCGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGTGTCCAACCCCGATGTACGTCCACCACCGTG > 2:2885115/1‑150 TAGCAATATTCATACGGGCTCGGTGTTGATCGAGCGGATGACCGTTGCTGGTAGCTGATCTTTAGCCTGCGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGTGTCCAACCCCGATGTACGTCCACCACCGTGTAGGAGC > 1:1984952/1‑149 TAGCAATATTCATACGGGCTCGGTGTTGATCGAGCGGATGACCGTTGCTGGTAGCTGATCTTTAGCCTGCGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGTGTCCAACCCCGATGTACGTCCACCACCGTGTAGGAGC < 2:1984952/149‑1 AGCAATATTCATACGGGCTCGGTGTTGATCGAGCGGATGACCGTTGCTGGTAGCTGATCTTTAGCCTGCGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGTGTCCAACCCCGATGTACGTCCACCACCGTGTAGGAGCGG < 1:2885115/150‑1 AGCAATATTCATACGGGCTCGGTGTTGATCGAGCGGATGACCGTTGCTGGTAGCTGATCTTTAGCCTGCGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGTGTCCAACCCCGATGTACGTCCACCACCGTGTAGGAGCGG < 1:2148073/150‑1 TCGAGCGGATGACCGTTGCTGGTAGCTGATCTTTAGCCTGCGCCGGCC‑CTTCGCGGGTGAACCCGCTCCTACAACGGCCTGTGTCCAACCCCGATGTACGTCCACCACCGTGT > 2:692672/1‑113 TCGAGCGGATGACCGTTGCTGGTAGCTGATCTTTAGCCTGCGCCGGCC‑CTTCGCGGGTGAACCCGCTCCTACAACGGCCTGTGTCCAACCCCGATGTACGTCCACCACCGTGT < 1:692672/113‑1 CCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGTGTCCAACCCCGATGTACGTCCACCACCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGGCTAAA > 1:2520984/1‑112 CCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGTGTCCAACCCCGATGTACGTCCACCACCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGGCTAAA < 2:2520984/112‑1 CGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGTGTCCAACCCCGATGTACGTCCACCACCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGGCTAAAGATCAGCTACCAGCAACGGTCATCCGCTCGATCAACACC > 2:1171058/1‑150 CGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGTGTCCAACCCCGATGTACGTCCACCACCGTGTAGGAGCGGGTTTACCCG > 2:561090/1‑88 CGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGTGTCCAACCCCGATGTACGTCCACCACCGTGTAGGAGCGGGTTTACCCG < 1:561090/88‑1 GCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGTGTCCAACCCCGATGTACGTCCACCACCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGGCTAAAGATCAGCTACCAGCAACGGTCATCC > 2:1299468/1‑134 GCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGTGTCCAACCCCGATGTACGTCCACCACCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGGCTAAAGATCAGCTACCAGCAACGGTCATCC < 1:1299468/134‑1 CTCTTCGCTGGTGAACCCGCTCCTACAACGGCCTGTGTCCAACCCCGATGTACGTCCACCACCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGGCTAAAGATCAGCTACCA < 2:2782338/119‑1 CTCTTCGCTGGTGAACCCGCTCCTACAACGGCCTGTGTCCAACCCCGATGTACGTCCACCACCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGGCTAAAGATCAGCTACCA > 1:2782338/1‑119 AGGAAGTCACCATCGCCGGAAACATGAAGGACATGTTCCAGCAGATTGTCGCGATCGGTAGCGATCTTGAAACCCGTAGCAATATTCATACGGGCTCGGTGTTGATCGAGCGGATGACCGTTGCTGGTAGCTGATCTTTAGCCTGCGCCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1088376‑1088528‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggccTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGTGTCCAACCCCGATGTACGTCCACCACCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGGCTAAAGATCAGCTACCAGCAACGGTCATCCGCTCGATCAACACC < NC_002947/1088617‑1088473 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |