| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1149934 = | 97 (0.850) | 7 (0.070) | 6/220 | NT | 8.0% | intergenic (‑175/+82) | PP_1008/gapA | RNA polymerase subunit sigma‑24/glyceraldehyde‑3‑phosphate dehydrogenase |
| ? | NC_002947 | 1149995 = | 73 (0.710) | intergenic (‑236/+21) | PP_1008/gapA | RNA polymerase subunit sigma‑24/glyceraldehyde‑3‑phosphate dehydrogenase | |||||
CTGGCCTGGTATGACAACGAGTGGGGGTTCAGCAACCGGATGCTGGACAACTGCCTGGCGCTGCACCGGGCTGGCTGACGCGACCCGTGTGGGAGCGGCCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1150093‑1149934‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggcaagGCCGCTCCCACACGGGTCGCGTCAGCCAGCCCGGTGCAGCGCCAGGCAGTTGTCCAGCATCCGGTTGCTGAACCCCCACTCGTTGTCATACCAGGCCAGCACCTTGAGCATCCGCCCGTTGGCCCGGGTATGGTTGGCATCGAAGATC > NC_002947/1149995‑1150142 CTGGCCTGGTATGACAACGAGTGGGGGTTCAGCAACCGGATGCTGGACAACTGCCTGGCGCTGCACCGGGCTGGCTGACGCGACCCGTATGGGAGCGGCCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTT > 1:1671828/1‑150 GCCTGGTATGACAACGAGTGGGGGTTCAGCAACCGGATGCTGGACAACTGCCTGGCGCTGCACCGGGCTGGCTGACGCGACCCGTGTGGGAGCGCCCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGTGCTTCGCCCGTGTTCGC < 2:2731278/150‑1 CCTGGTATGACAACGAGTGGGGGTTCAGCAACCGGATGCTGGACAACTGCCTGGCGCTGCACCGGGCTGGCTGACGCGACCCGTGTGGGAGCGGCCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCG < 2:1360803/150‑1 CTGGTATGACAACGAGTGGGGGTTCAGCAACCGGATGCTGGACAACTGCCTGGCGCTGCACCGGGCTGGCTGACGCGACCCGTGTGGGAGCGGCCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGG > 1:2834895/1‑150 TGGTATGACAACGAGTGGGGGTTCAGCAACCGGATGCTGGACAACTGCCTGGCGCTGCACCGGGCTGGCTGACGCGACCCGTGTGGGAGCGGCCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGG > 1:2625457/1‑150 GGTATGACAACGAGTGGGGGTTCAGCAACCGGATGCTGGACAACTGCCTGGCGCTGCACCGGGCTGGCTGACGCGACCCGTGTGGGAGCGGCCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGATTCGCCCGTGTTCGCTGGC > 1:2054671/1‑150 GTGGGGGTTCAGCAACCGGATGCTGGACAACTGCCTGGCGCTGCACCGGGCTGGCTGACGCGACCCGTGTGGGAGCGGCCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGG < 1:20619/135‑1 GTGGGGGTTCAGCAACCGGATGCTGGACAACTGCCTGGCGCTGCACCGGGCTGGCTGACGCGACCCGTGTGGGAGCGGCCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGG > 2:20619/1‑135 GCCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGGCCGCTCCCACACGGGTCGCGTCAGCCAGCCCGGTGCAGCGCCAGGCAGTTGTCCAGCATCCGGTTGCTGAACCCCCACTCGTTGTC > 1:2419183/1‑150 CCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGGCCGCTCCCACACGGGTCGCGTCAGCCAGCCCGGTGCAGCGCCAGGCAGTTGTCCAGCATCCGGTTGCTGAACCCCCACTCGTTGTCATACCAG > 1:1563652/1‑150 CCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGGCCGCTCCCACACGGGTCGCGTCAGCCAGCCCGGTGCAGCGCCAGGCA > 2:1546555/1‑104 CCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGGCCGCTCCCACACGGGTCGCGTCAGCCAGCCCGGTGCAGCGCCAGGCA < 1:1546555/104‑1 GCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACACGGGTCGCGTCAGCCAGCCCGGTGCAGCGCCAGGCAGTTGTCCAGCATCCGGTTGCTGAACCCCCACTCGTTGTCATACCAGGC > 2:3066559/1‑150 CCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGG < 1:3049970/43‑1 CCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGG > 2:3049970/1‑43 GTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGGCCGCTCCCACACGGGTCGCGTCAGCCAGCCCGGTGCAGCGCCAGGCAGTTGTCCAGCATCCGGTTGCTGAACCCCCACTCGTTGTCATACCAGGCCAGCACCTTGAGCA > 1:2789905/1‑150 GCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACACGGGTCGCGTCAGCCAGCCCGGTGCAGCGCCAGGCAGTTGTCCAGCATCCGGTTGCTGAACCCCCACTCGTTGTCATACCAGGCCAGCACCTTGAGCATCCGCCCCTT < 1:3066559/150‑1 CGCGGGCAAGGCCGCTCCCACACGGGTCGCGTCAGCCAGCCCGGTGCAGCGCCAGGCAGTTGTCCAGCATCCGGTTGCTGAACCCCCACTCGTTGTCATACCAGGCCAGCACCTTGAGCATCCGCCCGTTGGCCCGGGTATGGTTGGCAT < 2:1563652/150‑1 GCGGGCAAGGCCGCTCCCACACGGGTCGCGTCAGCCAGCCCGGTGCAGCGCCAGGCAGTTGTCCAGCATCCGGTTGCTGAACCCCCACTCGTTGTCATACCAGGCCAGCACCTTGAGCATCCGCCCGTTGGCCCGGGTATGGTTGGCATC < 1:529641/150‑1 GCGGGCAAGGCCGCTCCCACACGGGTCGCGTCAGCCAGCCCGGTGCAGCGCCAGGCAGTTGTCCAGCATCCGGTTGCTGAACCCCCACTCGTTGTCATACCAGGCCAGCACCTTGAGCATCCGCCCGTTGGCCCGGGTATGGTTGGCATC > 2:2741343/1‑150 AAGGCCGCTCCCACACGGGTCTCGTCAGCCAGCCCGGTGCAGCGCCAGGCAGTTGTCCAGCATC < 1:58354/64‑1 AAGGCCGCTCCCACACGGGTCGCGTCAGCCAGCCCGGTGCAGCGCCAGGCAGTTGTCCAGCATCCGGTTGCTGAACCCCCACTCGTTGTCATACCAGGCCAGCACCTTGAGCATCCGCCCGTTGGCCCGGGTATGGTTGGCATCGAAGAT > 1:1999411/1‑150 AAGGCCGCTCCCACACGGGTCGCGTCAGCCAGCCCGGTGCAGCGCCAGGCAGTTGTCCAGCATC > 2:58354/1‑64 AGGCCGCTCCCACACGGGTCGCGTCAGCCAGCCCGGTGCAGCGCCAGGCAGTTGTCCAGCATCCGGTTGCTGAACCCCCACTCGTTGTCATACCAGGCCAGCACCTTGAGCATCCGCCCGTTGGCCCGGGTATGGTTGGCATCGAAGATC < 2:438520/150‑1 AGGCCGCTCCCACACGGGTCGCGTCAGCCAGCCCGGTGCAGCGCCAGGCAGTTGTCCAGCATCCGGTTGCTGAACCCCCACGCGTTGTCATACCAGGCCAGCACCTTGAGCATCCGCCCGTTGGCCCGGGTATGGTTGGCATCGAAGATC > 1:408749/1‑150 CTGGCCTGGTATGACAACGAGTGGGGGTTCAGCAACCGGATGCTGGACAACTGCCTGGCGCTGCACCGGGCTGGCTGACGCGACCCGTGTGGGAGCGGCCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1150093‑1149934‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggcaagGCCGCTCCCACACGGGTCGCGTCAGCCAGCCCGGTGCAGCGCCAGGCAGTTGTCCAGCATCCGGTTGCTGAACCCCCACTCGTTGTCATACCAGGCCAGCACCTTGAGCATCCGCCCGTTGGCCCGGGTATGGTTGGCATCGAAGATC > NC_002947/1149995‑1150142 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |