| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1622544 | 72 (0.630) | 13 (0.130) | 9/208 | NT | 16.6% | intergenic (+24/+42) | PP_1421/PP_1422 | sensor histidine kinase TctE/hypothetical protein |
| ? | NC_002947 | = 1622558 | 69 (0.710) | intergenic (+38/+28) | PP_1421/PP_1422 | sensor histidine kinase TctE/hypothetical protein | |||||
GTTCTACCGGCGAAGTGCGCAGGGCAGTGGGTTAGGGCTGGCGATCGTTGGCGAGATCTGTCGGGCGCACCTGGCGCAAGTGACCCTGCACGATGGCGAGAAGGGCGGGTTGCGGGTGCGGGTGAGCTTTATCGCGGATTGATGGTTTGCCTGTGTCGCCCCTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1622379‑1622544‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgtgtcgcccctttcGCGGGTGAGCCCATGAAAGGGGCGACACAGGCAAACCATCAATCCGCGATAAAGCTCACCCGCACCCGCAACCCGCCCTTCTCGCCATCGTGCAGGGTCACTTGCGCCAGGTGCGCCCGACAGATCTCGCCAACGATCGCCAGCCCT < NC_002947/1622558‑1622412 GTTCTACCGGCGAAGTGCGCAGGGCAGTGGGTTAGGGCTGGCGATCGTTGGCGAGATCTGTCGGGCGCACCTGGCGCAAGTTCCGCTGCACGATGGCGAGAAGTGCGGGTTGCGGGTGCGGGTGAGCTTTATCGCGGATTGATGGTTTGC > 1:530877/1‑150 TTCTACCGGCGAAGTGCGCAGGGCAGTGGGTTAGGGCTGGCGATCGTTGGCGAGATCTGTCGGGCGCACCTGGCGCAAGTGACCCTGCACGATGGCGAGAAGGGCGGGTTGCGGGTGCGGGTGAGCTTTATCGCGGATTGATGGTTTGCC < 1:1376264/150‑1 TTCTACCGGCGAAGTGCGCAGGGCAGTGGGTTAGGGCTGGCGATCGTTGGCGAGATCTGTCGGGCGCACCTGGCGCAAGTGACCCTGCACGATGGCGAGAAGGGCGGGTTGCGGGTGCGGGTGAGCTTTATCGCGGATTGATGGTTTGCC > 1:2014684/1‑150 TCTACCGGCGAAGTGCGCAGGGCAGTGGGTTAGGGCTGGCGATCGTTGGCGAGATCTGTCGGGCGCACCTGGCGCAAGTGACCCTGCACGATGGCGAGAAGGGCGGGTTGCGGGTGCGGGTGAGCTTTATCGCGGATTGATGGTTTGCCT < 2:3070626/150‑1 TACCGGCGAAGTGCGCAGGGCAGTGGGTTAGGGCTGGCGATCGTTGGCGAGATCTGTCGGGCGCACCTGGCGCAAGTGACCCTGCACGATGGCGAGAAGGGCGGGTTGCGGGTGCGGGTGAGCTTTATCGCGGATTGATGGTTTGCCTGT > 1:503218/1‑150 TACCGGCGAAGTGCGCAGGGCAGTGGGTTAGGGCTGGCGATCGTTGGCGAGATCTGTCGGGCGCACCTGGCGCAAGTGACCCTGCACGATGGCGAGAAGGGCGGGTTGCGGGTGCGGGTGAGCTTTATCGCGGATTGATGGTTTGCCTGT > 1:499805/1‑150 TACCGGCGAAGTGCGCAGGGCAGTGGGTTAGGGCTGGCGATCGTTGGCGAGATCTGTCGGGCGCACCCGGCGCAAGTGACCCTGCACGATGGCGAGAAGGGCGGGTTGCGGGTGCGGGTGAGCTTTATCGCGGATTGATGGTTTGCCTGT < 1:2419613/150‑1 ACCGGCGAAGTGCGCAGGGCAGTGGGTTAGGGCTGGCGATCGTTGGCGAGATCTGTCGGGCGCACCTGGCGCAAGTGACCCTGCACGATGGCGAGAAGGGCGGGTTGCGGGTGCGGGTGAGCTTTATCGCGGATTGATGGTTTGCCTGTG > 1:2506881/1‑150 CCGGCGAAGTGCGCAGGGCAGTGGGTTAGGGCTGGCGATCGTTGGCGAGATCTGTCGGGCGCACCTGGCGCAAGTGACCCTGCACGATGGCGAGAAGGGCGGGTTGCGGGTGCGGGTGAGCTTTATCGCGGATTGATGGTTTGCCTGTGT < 2:593821/150‑1 CGGCGAAGTGCGCAGGGCAGTGGGTTAGGGCTGGCGATCGTTGGCGAGATCTGTCGGGCGCACCTGGCGCAAGTGACCCTGCACGATGGCGAGAAGGGCGGGTTGCGGGTGCGGGTGAGCTTTATCGCGGATTGATGGTTTGCCTGTGTC > 2:2525546/1‑150 CGGCGAAGTGCGCAGGGCAGTGGGTTAGGGCTGGCGATCGTTGGCGAGATCTGTCGGGCGCACCTGGCGCAAGTGACCCTGCACGATGGCGAGAAGGGCGGGTTGCGGGTGCGGGTGAGCTTTATCGCGGATTGATGGTTGGCTTTTGTg > 2:2288582/1‑149 GTGCGCAGGGCAGTGGGTTAGGGCTGGCGATCGTTGGCGAGAACTGTGGGGCGCACCTGGCGCAAGTGACCCTGCACGATGGCGAGAAGGGCGGGTTGCGGGTGCGGGTGAGCTTTATCGCGGATTGATGGGTTGCCTGTGTCGCCCCTT > 1:2242375/1‑150 GTGCCCAGGGCAGTGGGTTAGGGCTGGCGATTGTTGGCGAGATCTGGCGGGCGCACCTGGGGCAAGTGACCCTGCACGATGGCGAGAAGGGCGGGGTGCGGGTGCGGGTGAGCTTTATCGCGGGTTGATGGTTTGCCTGTGTCGCCCCTT < 1:2288582/150‑1 GCGCAGGGCAGTGGGTTAGGGCTGGCGATCGTTGGCGAGATCTGTCGGGCGCACCTGGCGCAAGTGACCCTGCACGATGGCGAGAAGGGCGGGTTGCGGGTGCGGGTGAGCTTTATCGCGGATTGATGGTTTGCCTGTGTCGCCCCTTTC < 1:1997980/150‑1 AGTGGGTTAGGGCTGGCGATCGTTGGCGAGATCTGTCGGGCGCACCTGGCGCAAGTGACCCTGCACGATGGCGAGAAGGGCGGGTTGCGGGTGCGGGTGAGCTTTATCGCGGATTGATGGTTTGCCTGTGTC < 1:325622/132‑1 AGTGGGTTAGGGCTGGCGATCGTTGGCGAGATCTGTCGGGCGCACCTGGCGCAAGTGACCCTGCACGATGGCGAGAAGGGCGGGTTGCGGGTGCGGGTGAGCTTTATCGCGGATTGATGGTTTGCCTGTGTC > 2:325622/1‑132 GTGGGTTAGGGCTGGCGATCGTTGGCGAGATCTGTCGGGCGCACCTGGCGCAAGTGACCCTGCACGATGGCGAGAAGGGCGGGTTGCGGGTGCGGGTGAGCTTTATCGCGGATTGATGGTTTGCCTGTGTCGCCCCTTTC < 1:408412/140‑1 GTGGGTTAGGGCTGGCGATCGTTGGCGAGATCTGTCGGGCGCACCTGGCGCAAGTGACCCTGCACGATGGCGAGAAGGGCGGGTTGCGGGTGCGGGTGAGCTTTATCGCGGATTGATGGTTTGCCTGTGTCGCCCCTTTC > 2:408412/1‑140 GGGCTGGCGATCGTTGGCGAGATCTGTCGGGCGCACCTGGCGCAAGTGACCCTGCACGATGGCGAGAAGGGCGGGTTGCGGGTGCGGGTGAGCTTTATCGCGGATTGATGGTTTGCCTGTGTCGCCCCTTTCGCGGGTGAGCCCATGAAA < 2:253803/150‑1 GGCTGGCGATCGTTGGCGAGATCTGTCGGGCGCACCTGGCGCAAGTGACCCTGCACGATGGCGAGAAGGGCGGGTTGCGGGTGCGGGTGAGCTTTATCGCGGATTGATGGTTTGCCTGTGTCGCCCCTTTCGCGGGTGAGCCCATGAAAG < 1:41898/150‑1 CTGGCGATCGTTGGCGAGATCTGTCGGGCGCACCTGGCGCAAGTGACCCTGCACGATGGCGAGAAGGGCGGGTTGCGGGTGCGGGTGAGCTTTATCGCGGATTGATGGTTTGCCTGTGTCGCCCCTTTCGCGGGTGAGCCCATGAAAGGG < 1:1648466/150‑1 TGGCGATCGTTGGCGAGATCTGTCGGGCGCACCTGGCGCAAGTGACCCTGCACGATGGCGAGAAGGGCGGGTTGCGGGTGCGGGTGAGCTTTATCGCGGATTGATGGTTTGCCTGTGTCGCCCCTTTCGCGGGTGAGCCCATGCAAGGGG < 2:1656897/150‑1 CGATCGCTGGCGAGATCTGTCGGGCGCACCTGGCGCAAGTGACCCTGCACGATGGCGAGAAGGGCGGGTTGCGGGTGCGGGTGAGCTTTATCGCGGATTGATGGTTTGCCTGTGTCGCCCCTTTCGCGGGTGAGCCCATGAAAGGGGCGA < 2:1196084/150‑1 GATCGTTGGCGAGATCTGTCGGGCGCACCTGGCGCAAGTGACCCTGCACGATGGCGAGAAGGGCGGGTTGCGGGTGCGGGTGAGCTTTATCGCGGATTGATGGTTTGCC < 2:638171/109‑1 GATCGTTGGCGAGATCTGTCGGGCGCACCTGGCGCAAGTGACCCTGCACGATGGCGAGAAGGGCGGGTTGCGGGTGCGGGTGAGCTTTATCGCGGATTGATGGTTTGCC > 1:638171/1‑109 CGAGATCTGTCGGGCGCACCTGGCGCAAGTGACCCTGCACGATGGCGAGAAGGGCGGGTTGCGGGTGCGGGTGAGCTTTATCGCGGATTGATGGTTTG > 1:332852/1‑98 CGAGATCTGTCGGGCGCACCTGGCGCAAGTGACCCTGCACGATGGCGAGAAGGGCGGGTTGCGGGTGCGGGTGAGCTTTATCGCGGATTGATGGTTTG < 2:332852/98‑1 ATCTGTCGGGCGCACCTGGCGCAAGTGACCCTGCACGATGGCGAGAAGGGCGGGTTGCGGGTGCGGGTGAGCTTTATCGCGGATTGATGGTTTGCCTGTGTCGCCCCTTTCGCGGGTGAGCCCATGAAAGGGG > 1:1235112/1‑133 ATCTGTCGGGCGCACCTGGCGCAAGTGACCCTGCACGATGGCGAGAAGGGCGGGTTGCGGGTGCGGGTGAGCTTTATCGCGGATTGATGGTTTGCCTGTGTCGCCCCTTTCGCGGGTGAGCCCATGAAAGGGG < 2:1235112/133‑1 TGGCGCAAGTGACCCTGCACGATGGCGAGAAGGGCGGGTTGCGGGTGCGGGTGAGCTTTATCGCGGATTGATGGTTTGCCTGTGT > 1:1528583/1‑85 TGGCGCAAGTGACCCTGCACGATGGCGAGAAGGGCGGGTTGCGGGTGCGGGTGAGCTTTATCGCGGATTGATGGTTTGCCTGTGT < 2:1528583/85‑1 GTGACCCTGCACGATGGCGAGAAGGGCGGGTTGCGGGTGCGGGTGAGCTTTATCGCGGATTGATGGTTTGCCTGTGTCGCCCCTTTCGCGGGTGAGCCCATGAAAGGGG < 2:823881/109‑1 GTGACCCTGCACGATGGCGAGAAGGGCGGGTTGCGGGTGCGGGTGAGCTTTATCGCGGATTGATGGTTTGCCTGTGTCGCCCCTTTCGCGGGTGAGCCCATGAAAGGGG > 1:823881/1‑109 CTGCACGATGGCGAGAAGGGCGGGTTGCGGGTGCGGGTGAGCTTTATCGCGGATTGATGGTTTGCCTGTGTCGCCCCTTTCGCGGGTGAGCCCATGAAAGGG < 1:2292896/102‑1 CTGCACGATGGCGAGAAGGGCGGGTTGCGGGTGCGGGTGAGCTTTATCGCGGATTGATGGTTTGCCTGTGTCGCCCCTTTCGCGGGTGAGCCCATGAAAGGG > 2:2292896/1‑102 AAGGGCGGGTTGCGGGTGCGGGTGAGCTTTATCGCGGATTGATGGTTTGCCT > 2:1092522/1‑52 AAGGGCGGGTTGCGGGTGCGGGTGAGCTTTATCGCGGATTGATGGTTTGCCT < 1:1092522/52‑1 GTGCGGGTGAGCTTTATCGCGGATTGATGGTTTGCCTGTGTCGCCCCTTTCGCGGGTGAGCCCATGAAAGGGG > 2:1556866/1‑73 GTGCGGGTGAGCTTTATCGCGGATTGATGGTTTGCCTGTGTCGCCCCTTTCGCGGGTGAGCCCATGAAAGGGG < 1:1556866/73‑1 GCCTGTGTCGCCCCTTTCGCGGGTGAGCCCATGAAAGGGGCGACACAGGCAAACCATCAATCCGCGATAAAGCTCACCCGCACCCGCAACCCGCCCTTCTCGCCATCGTGCAGGGTCACTTGCGCCAGGTGCGCCCGACAGATCTCGCCA > 1:2843284/1‑150 CCTGTGTCGCCCCTTTCGCGGGTGAGCCCATGAAAGGGGCGACACAGGCAAACCATCAATCCGCGATAAAGCTCACCCGCACCCGCAACCCGCCCTTCTCGCCATCGTGCAGGGTCACTTGCGC > 1:347982/1‑124 CCTGTGTCGCCCCTTTCGCGGGTGAGCCCATGAAAGGGGCGACACAGGCAAACCATCAATCCGCGATAAAGCTCACCCGCACCCGCAACCCGCCCTTCTCGCCATCGTGCAGGGTCACTTGCGC < 2:347982/124‑1 TGTGTCGCCCCTTTCGCGGGTGAGCCCATGAAAGGGGCGACACAGGCAAACCATCAATCCGCGATAAAGCTCACCCGCACCCGCAACCCGCCCTTCTCGCCATCGTGCAGGGTCACTTGCGCCAGGTGCGCCCGACAGATCTCGCCAACG > 1:2420264/1‑150 gatctCTTTCGCGGGTGAGCCCATGAAAGGGGCGACACAGGCAAACCATCCATCCGCGATAAAGCTCACCCGCACCCGCAACCCGCCCTTCTCGCCATCGTGCAGGGTCACTTGCGCCAGGTGCGCCCGACAGATCTCGCCAACGATCGC < 1:2969432/145‑1 ctCCCCTTTCGCGGGTGAGCCCATGAAAGGGGCGACACAGGCAAACCATCAATCCGCGATAAAGCTCACCCGCACCCGCAACCCGCCCTTCTCGCCATCGTGCAGGGTCACTTGCGCCAGGTGCGCCCGACAGATCTCGCCAACGATCcc > 2:1241639/3‑148 GCCCCTTTCGCGGGTGAGCCCATGAAAGGGGCGACACCGGCAAACCATCAATCCGCGATAAAGCTCACCCGCACCCGCAACCCGCCCTTCTCGCCATCGTGCAGGGTCACTTGCGCCAGGTGCGCCCGACAGATCTCGCCAACGATCGCC > 2:530877/1‑150 GCCCCTTTCGCGGGTGAGCCCATGAAAGGGGCGACACAGGCAAACCATCAATCCGCGATAAAGCTCACCCGCACCCGCAACCCGCCCTTCTCGCCATCGTGCAGGGTCACTTGCGCCAGGTGCGCCCGACAGATCTCGCCAACGATCGCC > 2:2312059/1‑150 CCCCTTTCGCGGGTGAGCCCATGAAAGGGGCGACACAGGCAAACCATCAATCCGCGATAAAGCTCACCCGCACCCGCAACCCGCCCTTCTCGCCATCGTGCAGGGTCACTTGCGCCAGGTGCGCCCGACAGATCTCGCCAACGATCGCCA > 2:2486398/1‑150 CCCCTTTCGCGGGTGAGCCCATGAAAGGGGCGACACAGGCAAACCATCAATCCGCGATAAAGCTCACCCGCACCCGCAACCCGCCCTTCTCGCCATCGTGCAGGGTCACTTGCGCCAGGTGCGCCCGACAGATCTCGCCAACGATCGCCA > 1:2525546/1‑150 CCCCTTTCGCGGGTGAGCCCATGAAAGGGGCGACACAGGCAAACCATCAATCCGCGATAAAGCTCACCCGCACCCGCAACCCGCCCTTCTCGCCATCGTGCAGGGTCACTTGCGCCAGGTGCGCCCGACAGATCTCGCCAACGATCGCCA > 2:2405106/1‑150 CCCCTTTCGCGGGTGAGCCCATGAAAGGGGCGACACAGGCAAACCATCAATCCGCGATAAAGCTCACCCGCACCCGCAACCCGCCCTTCTCGCCATCGTGCAG < 1:2696810/103‑1 CCCCTTTCGCGGGTGAGCCCATGAAAGGGGCGACACAGGCAAACCATCAATCCGCGATAAAGCTCACCCGCACCCGCAACCCGCCCTTCTCGCCATCGTGCAG > 2:2696810/1‑103 CCCTTTCGCGGGTGAGCCCATGAAAGGGGCGACACAGGCAAACCATCAATCCGCGATAAAGCTCACCCGCACCCGCAACCCGCCCTTCTCGCCATCGTGCATGGTCACTT > 2:2055298/1‑110 CCCTTTCGCGGGTGAGCCCATGAAAGGGGCGACACAGGCAAACCATCAATCCGCGATAAAGCTCACCCGCACCCGCAACCCGCCCTTCTCGCCATCGTGCAGGGTCACTT < 1:2055298/110‑1 CCTTTCGCGGGTGAGCCCATGAAAGGGGCGACACAGGCAAACCATCAATCCGCGATAAAGCTCACCCGCACCCGCAACCCGCCCTTCTCGCCATCGTGCAGGGTCACTTGCGCCAGGTGCGCCCGACAGATCTCGCCAACGATCGCCAGC > 2:2150925/1‑150 CTTTCGCGGGTGAGCCCATGAAAGGGGCGACACAGGCAAACCATCAATCCGCGATAAAGCTCACCCGCACCCGCAACCCGCCCTTCTCGCCATCGTGCAGGGTCACTTGCGCCAGGTGCGCCCGACAGATGTCGCCAACGATCGCCAGCC > 2:2014684/1‑150 CTTTCGCGGGTGAGCCCATGAAAGGGGCGACACAGGCAAACCATCAATCCGCGATAAAGCTCACCCGCACCCGCAACCCGCCCTTCTCGCCATCGTGCAGGGTCACTTGCGCCAGGTGCGCCCGACAGATCTCGCCAACGATCGCCAGCC < 1:2312059/150‑1 TTTCGCGGGTGAGCCCATGAAAGGGGCGACACAGGCAAACCATCAATCCGCGATAAAGCTCACCCGCACCCGCAACCCGCCCTTCTCGCCATCGTGCAGGGTCACTTGCGCCAGGTGCGCCCGACAGATCTCGCCAACGATCGCCAGCCC < 2:2843284/150‑1 TTCGCGGGTGAGCCCATGAAAGGGGCGACACAGGCAAACCATCAATCCGCGATAAAGCTCACCCGCACCCGCAACCCGCCCTTCTCGCCATCGTGCAGGGTCACTTGCGCCAGGTGCGCCCGACAGATCTCGCCAACGATCGCCAGCCCT > 2:2506881/1‑150 GTTCTACCGGCGAAGTGCGCAGGGCAGTGGGTTAGGGCTGGCGATCGTTGGCGAGATCTGTCGGGCGCACCTGGCGCAAGTGACCCTGCACGATGGCGAGAAGGGCGGGTTGCGGGTGCGGGTGAGCTTTATCGCGGATTGATGGTTTGCCTGTGTCGCCCCTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1622379‑1622544‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgtgtcgcccctttcGCGGGTGAGCCCATGAAAGGGGCGACACAGGCAAACCATCAATCCGCGATAAAGCTCACCCGCACCCGCAACCCGCCCTTCTCGCCATCGTGCAGGGTCACTTGCGCCAGGTGCGCCCGACAGATCTCGCCAACGATCGCCAGCCCT < NC_002947/1622558‑1622412 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |