New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1850914 =	100 (0.870)	7 (0.070)	6/228	NT	7.3%	intergenic (+54/‑43)	rlmD/relA	23S rRNA (uracil(1939)‑C(5))‑methyltransferase RlmD/ATP:GTP 3'‑pyrophosphotransferase
	?	NC_002947	1850937 =	84 (0.790)					intergenic (+77/‑20)	rlmD/relA	23S rRNA (uracil(1939)‑C(5))‑methyltransferase RlmD/ATP:GTP 3'‑pyrophosphotransferase

TTCAGCGCTGCGCGATCCAGTGCCGAATCGACGCTTACCACATGGTCCAACCATGCTTCGAGATTGATACTGCCGTCAGTGTTGACCGGCTGGTGCACTCTCACCTGTACCATCTTTGTTTTACCTTTCCATGCAGCACAC‑CATACGAGTGTGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1851069‑1850914 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgtgctgCATGGAAAGGTAAAACAAAGATGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTCGGCACTGGATCGCGCAGCGCTGAAAGAAGCCTGCGAGTT  >  NC_002947/1850937‑1851084                                                                                                                                                                                                                                                                                                                   TTCAGCGCTGCGCGATCCAGTGCCGAATCGACGCTTACCACATGGTCCAACCATGCTTCGAGATTGATACTGCCGTCAGTGTTGACCGGCTGGTGCACTCTCACCTGTACCTTCTTTGTTTTACCTTTCCATGCAGCACAC‑CATACGAGT                                                                                                                                                            <  1:912855/150‑1      CGCTGCGCGATCCAGTGCCGAATCGACGCTTACCACATGGTCCAACCATGCTTCGAGATTGATACTGCCGTCAGTGTTGACCGGCTGGTGCACTCTCACCTGTACCTTCTTTGTTTTACCTTTCCATGCAGCACAC‑CATACGAGTGTGCT                                                                                                                                                       >  1:2696625/1‑150                TCCAGTGCCGAATCGACGCTTACCACATGGTCCAACCATGCTTCGAGATTGATACTGCCGTCAGTGTTGACCGGCTGGTGCACTCTCACCTGTACCTTCTTTGTTTTACCTTTCCATGCAGCACACTCGTATG‑GTGTGCTGCATGGAAAG                                                                                                                                             <  1:739125/150‑1                                                                                                                               TTCCATGCAGCACAC‑CATACGAGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCG                                                                                                       <  1:3003591/77‑1                                                                                                                               TTCCATGCAGCACAC‑CATACGAGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCG                                                                                                       >  2:3003591/1‑77                                                                                                                               TTCCATGCAGCACAC‑CATACGAGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCA                                                                                                              <  1:267128/70‑1                                                                                                                               TTCCATGCAGCACAC‑CATACGAGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCA                                                                                                              >  2:267128/1‑70                                                                                                                                    TGCAGCACAC‑CATACGAGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTC                                                                                                    >  1:1787438/1‑75                                                                                                                                    TGCAGCACAC‑CATACGAGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTC                                                                                                    <  2:1787438/75‑1                                                                                                                                                      GTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTCGGCA                                     <  2:292642/121‑1                                                                                                                                                      GTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACAAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTCGGCA                                     >  1:292642/1‑121                                                                                                                                                       TGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTCGGCACTGGATCGCGCAGCGCTGAAAGAAGCCTGC       >  1:2439944/1‑150                                                                                                                                                       TGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTCGGCACTGGATCGCGCAGCGCTGAAAGAAGCCTGC       >  2:1323063/1‑150                                                                                                                                                         TGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTCGGCACTGGATCGCGCAGCGCTGAAAGAAGCCTGCGA     <  1:796423/150‑1                                                                                                                                                           CTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTCGGCACTGGATCGCGCAGCGCTGAAAGAAGCCTGCGAGT   >  1:2276340/1‑150                                                                                                                                                            TGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTCGGCACTGGATCGCGCAGCCCTGAAAGAAGCCTGCGAGTT  >  2:68718/1‑150                                                                                                                                                                                                                                                                                                                   TTCAGCGCTGCGCGATCCAGTGCCGAATCGACGCTTACCACATGGTCCAACCATGCTTCGAGATTGATACTGCCGTCAGTGTTGACCGGCTGGTGCACTCTCACCTGTACCATCTTTGTTTTACCTTTCCATGCAGCACAC‑CATACGAGTGTGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1851069‑1850914 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgtgctgCATGGAAAGGTAAAACAAAGATGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTCGGCACTGGATCGCGCAGCGCTGAAAGAAGCCTGCGAGTT  >  NC_002947/1850937‑1851084

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.