New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 1850914 =100 (0.870)7 (0.070) 6/228 NT 7.3% intergenic (+54/‑43) rlmD/relA 23S rRNA (uracil(1939)‑C(5))‑methyltransferase RlmD/ATP:GTP 3'‑pyrophosphotransferase
?NC_002947 1850937 = 84 (0.790)intergenic (+77/‑20) rlmD/relA 23S rRNA (uracil(1939)‑C(5))‑methyltransferase RlmD/ATP:GTP 3'‑pyrophosphotransferase

Only 100 of 124 total aligned reads displayed.

CGGCCAGGGGTACCGGTTAAAAAGGGCCGGGATTCTCGACATGTTTCCTCAGACGGCGCATGTCGAGGCCATGGCGTTATTCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGATGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTCGGCACTGGATCGCG  >  NC_002947/1850767‑1851059
                                                                                                                                                   |                                                                                                                                                  
actcgcaggcttctttcagcgctgcgcgatccagtgccgaatcgacgcttaccacatggtccaaccatgcttcgagattgatactgccgtcagtgttgaccggctggtgcactctcacctgtaccttctttgttttacctttccatgcag                                                                                                                                                  >  1:2276340‑M1/148‑150 (MQ=255)
    gcaggcttctttcagcgctgcgcgatccagtgccgaatcgacgcttaccacatggtccaaccatgcttcgagattgatactgccgtcagtgttgaccggctggtgcactctcacctgtaccttctttgttttacctttccatgCAGcaca                                                                                                                                              >  2:1323063‑M1/144‑150 (MQ=255)
    gcaggcttctttcagcgctgcgcgatccagtgccgaatcgacgcttaccacatggtccaaccatgcttcgagattgatactgccgtcagtgttgaccggctggtgcactctcacctgtaccttctttgttttacctttccatgCAGcaca                                                                                                                                              >  1:2439944‑M1/144‑150 (MQ=255)
            ccGGTTAAAAAGGGCCGGGATTCTCGACATGTTTCCTCAGACGGCGCATGTCGAGGCCATGGCGTTATTCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATg                                                                                                                                      <  2:2933677/150‑1 (MQ=255)
            ccGGTTAAAAAGGGCCGGGATTCTCGACATGTTTCCTCAGACGGCGCATGTCGAGGCCATGGCGTTATTCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATg                                                                                                                                      >  1:744672/1‑150 (MQ=255)
               gTTAAAAAGGGCCGGGATTCTCGACATGTTTCCTCAGACGGCGCATGTCGAGGCCATGGCGTTATTCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGgtg                                                                                                                                  >  2:432471/1‑150 (MQ=255)
                ttAAAAAGGGCCGGGATTCTCGACATGTTTCCTCAGACGGCGCATGTCGAGGCCATGGCGTTATTCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGgtgt                                                                                                                                 <  1:432471/150‑1 (MQ=255)
                 tAAAAAGGGCCGGGATTCTCGACATGTTTCCTCAGACGGCGCATGTCGAGGCCATGGCGTTATTCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGtgtg                                                                                                                                <  1:2113889/150‑1 (MQ=255)
                   aaaaGGGCCGGGATTCTCGACATGTTTCCTCAGACGGCGCATGTCGAGGCCATGGCGTTATTCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGtgct                                                                                                                              >  2:2498630/1‑150 (MQ=255)
                       gggCCGGGATTCTCGACATGTTTCCTCAGACGGCGCATGTCGAGGCCATGGCGTTATTCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCAt                                                                                                                          <  2:1521841/150‑1 (MQ=255)
                       gggCCGGGATTCTCGACATGTTTCCTCAGACGGCGCATGTCGAGGCCATAAGGGTATTCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCAt                                                                                                                          >  1:1615380/1‑150 (MQ=255)
                        ggCCGGGATTCTCGACATGTTTCCTCAGACGGCGCATGTCGAGGCCATGGCGTTATTCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATg                                                                                                                         <  2:513892/150‑1 (MQ=255)
                         gCCGGGATTCTCGACATGTTTCCTCAGACGGCGCATGTCGAGGCCATGGCGTTATTCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTc                                                                                                                                           >  1:1860549/1‑132 (MQ=255)
                           cGGGATTCTCGACATGTTTCCTCAGACGGCGCATGTCGAGGCCATGGCGTTATTCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTa                                                                                                                                        <  1:501645/133‑1 (MQ=255)
                             ggATTCTGGACATGTTTCCTCAGACGGCGCATGTCGAGGCCATGGCGTTATTCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAg                                                                                                                    <  2:848914/150‑1 (MQ=255)
                             ggATTCTCGACATGTTTCCTCAGACGGCGCATGTCGAGGCCATGGCGTTATTCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGc                                                                                                                                                 >  2:2551491/1‑122 (MQ=255)
                             ggATTCTCGACATGTTTCCTCAGACGGCGCATGTCGAGGCCATGGCGTTATTCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGc                                                                                                                                                 <  1:2551491/122‑1 (MQ=255)
                               agtctcGACATCTTTCATAAGCCGGCGCATGTCGCGTTCATGTCGTGATGCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGt                                                                                                                  <  2:28090/148‑1 (MQ=255)
                               aTTCTGCACATGTTTCCTCCGACGCCGCATGTCGAGGCCATGGCGTTATTCGAAGCGGGCCAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGt                                                                                                                  <  2:660818/150‑1 (MQ=255)
                                ttCTCGACATGTTTCCTCAGACGGCGCATGTCGAGGCCATGGCGTTATTCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGgt                                                                                                                                   <  2:1690206/132‑1 (MQ=255)
                                ttCTCGACATGTTTCCTCAGACGGCGCATGTCGAGGCCATGGCGTTATTCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGgt                                                                                                                                   >  1:1690206/1‑132 (MQ=255)
                                ttCTCGACATGTTTCCTCAGACGGCGCATGTCGAGGCCATGGCGTTATTCGAAGCGGGCCAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTa                                                                                                                 >  1:660818/1‑150 (MQ=255)
                                  tgccgaatcgacgcttaccacatggtccaaccatgcttcgagattgatactgccgtcagtgttgaccggctggtgcactctcacctgtaccttctttgttttacctttccatgCAGCacac                                                                                                                                             <  2:292642‑M1/8‑1 (MQ=255)
                                  ctcGACATGTTTCCTCAGACGGCGCATGTCGAGGCCATGGCGTTATTCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTaaa                                                                                                               <  2:1138589/150‑1 (MQ=255)
                                   tcGACATGTTTCCTCAGACGGCGCATGTCGAGGCCATGGCGTTATTCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGTCCGCACGGGGATCGCCAGCACACTCGTATGGTTTGCTGCATGGAAAGGTaaaa                                                                                                              <  2:438526/150‑1 (MQ=255)
                                   tcGACATGTTTCCTCAGACGGCGCATGTCGAGGCCATGGCGTTATTCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTaaaa                                                                                                              >  2:796423/1‑150 (MQ=255)
                                      aCATGTTTCCTCAGACGGCGCATGTCGAGGCCATGGCGTTATTCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACaa                                                                                                           >  1:1164936/1‑150 (MQ=255)
                                       cATGTTTCCTCAGACGGCGCATGTCGAGGCCATGGCGTTATTCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACaaa                                                                                                          >  2:2903794/1‑150 (MQ=255)
                                        aTGTTTCCTCAGACGGCGCATGTCGAGGCCATGGCGTTATTCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGgt                                                                                                                                   <  1:235170/124‑1 (MQ=255)
                                          gTTTCCTCGGACGGCGCATGTCGAGGCCATGGCGTTATGTCAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGAt                                                                                                       <  1:939701/150‑1 (MQ=255)
                                               cTCAGACGGCGTTTGCCTAGGCCATGGCGTTATTCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTAc                                                                                                  <  2:1615380/150‑1 (MQ=255)
                                                tCAGACGGCGCATGTCGAGGCCATGGCGTTATTCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGtgtg                                                                                                                                >  2:2865675/1‑119 (MQ=255)
                                                tCAGACGGCGCATGTCGAGGCCATGGCGTTATTCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGtgtg                                                                                                                                <  1:2865675/119‑1 (MQ=255)
                                                   gACGGCGCATGTCGAGGCCTTGGCGTTATTCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGt                                                                                              <  2:2023502/150‑1 (MQ=255)
                                                       gcgcATGTCGAGGCCATGGCGTTATTCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTgaga                                                                                          <  1:1026157/150‑1 (MQ=255)
                                                          cATGTCGAGGCCATCGCGTTACCCGAAGCGGGGTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGTCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTg                                                                                       <  1:2205329/150‑1 (MQ=255)
                                                              tCGAGGCCATGGCGTTATTCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTga                                                                                            >  2:234502/1‑141 (MQ=255)
                                                                gAGGCCATGGCGTTATTCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCa                                                                                                                                                   <  2:548112/85‑1 (MQ=255)
                                                                    ccATGGCGTTATTCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCgg                                                                             >  1:2342330/1‑150 (MQ=255)
                                                                       tGGCGTTATTCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCa                                                                          >  1:2881269/1‑150 (MQ=255)
                                                                        ggCGTTATTCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCaa                                                                         <  1:2903794/150‑1 (MQ=255)
                                                                          cGTTATTCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAaca                                                                       <  1:1042296/150‑1 (MQ=255)
                                                                           gTTATTCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAacac                                                                      <  2:1921720/150‑1 (MQ=255)
                                                                                  gAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGc                                                               >  2:2696625/1‑150 (MQ=255)
                                                                                   aaGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACGAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCa                                                              >  2:2993346/1‑150 (MQ=255)
                                                                                   aaGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCa                                                              >  2:1875431/1‑150 (MQ=255)
                                                                                         gCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAgg                                                                                               >  2:2440607/1‑111 (MQ=255)
                                                                                         gCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAgg                                                                                               <  1:2440607/111‑1 (MQ=255)
                                                                                             gCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGaa                                                                                                       <  2:1583995/99‑2 (MQ=255)
                                                                                             gCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGaa                                                                                                       >  1:1583995/1‑98 (MQ=255)
                                                                                               tGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGATGGTACAGGTGAGAGTGCAc                                                                                    <  1:89725/116‑1 (MQ=255)
                                                                                               tGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGATGGTACAGGTGAGAGTGCAc                                                                                    >  2:89725/1‑116 (MQ=255)
                                                                                                gACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTa                                                                                                                 >  1:596091/1‑86 (MQ=255)
                                                                                                gACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTa                                                                                                                 <  2:596091/86‑1 (MQ=255)
                                                                                                 gaccggctggtgcactctcacctgtaccttctttgttttacctttccatgCAGCACACTCGTATGGTGTGCTGCa                                                                                                                           >  1:1787438‑M1/51‑75 (MQ=255)
                                                                                                 gaccggctggtgcactctcacctgtaccttctttgttttacctttccatgCAGCACACTCGTATGGTGTGCTGCa                                                                                                                           <  2:1787438‑M1/25‑1 (MQ=255)
                                                                                                 aCTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGc                                                                                      >  2:1144347/1‑112 (MQ=255)
                                                                                                 aCTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGaa                                                <  2:2769693/150‑1 (MQ=255)
                                                                                                 aCTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCAGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGc                                                                                      <  1:1144347/112‑1 (MQ=255)
                                                                                                    ggCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACg                                                                 <  2:2026539/130‑1 (MQ=255)
                                                                                                    ggCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACg                                                                 >  1:2026539/1‑130 (MQ=255)
                                                                                                    ggCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCa                                             <  1:16609/150‑1 (MQ=255)
                                                                                                    cggctggtgcactctcacctgtaccttctttgttttacctttccatgCAGCACACTCGTATGGTGTGCTGCATGGaa                                                                                                                      <  1:3003591‑M1/30‑1 (MQ=255)
                                                                                                    cggctggtgcactctcacctgtaccttctttgttttacctttccatgCAGCACACTCGTATGGTGTGCTGCATGGaa                                                                                                                      >  2:3003591‑M1/48‑77 (MQ=255)
                                                                                                     gCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGATGGTACAGGTGAGAGTGCAcc                                                                                   >  1:942744/1‑111 (MQ=255)
                                                                                                     gCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGATGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCAt                                            <  1:2058106/150‑1 (MQ=255)
                                                                                                     gCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCAt                                            <  2:2245613/150‑1 (MQ=255)
                                                                                                       cccTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGc                                                               <  2:2310850/129‑1 (MQ=255)
                                                                                                       cccTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGc                                                               >  1:2310850/1‑129 (MQ=255)
                                                                                                         cTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAg                                                                                                <  2:2771127/94‑1 (MQ=255)
                                                                                                         cTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAg                                                                                                >  1:2771127/1‑94 (MQ=255)
                                                                                                         cTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGtt                                        >  2:1555275/1‑150 (MQ=255)
                                                                                                         cTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTAGTATGGTATGATGCATTCAAATGGAAAACCAGGAAGGTACAGGTGAGAGCGACCCAGCCGTTCAACACTGACGGCAGTATCAATCTCGAAGCATGGtt                                        <  1:2993346/150‑1 (MQ=255)
                                                                                                           tgcactctcacctgtaccttctttgttttacctttccatgCAGCACACTCGTATGGTGTGCTGCATGGaa                                                                                                                      >  2:267128‑M1/41‑70 (MQ=255)
                                                                                                           tgcactctcacctgtaccttctttgttttacctttccatgCAGCACACTCGTATGGTGTGCTGCATGGaa                                                                                                                      <  1:267128‑M1/30‑1 (MQ=255)
                                                                                                            ggTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGa                                     <  1:1555275/150‑1 (MQ=255)
                                                                                                                  gTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGATGGTACAgg                                                                                               <  2:1683345/86‑1 (MQ=255)
                                                                                                                  gTTGCCAACGAAGGGCGGCCGCACGGTGATCGCCAGCACTCTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCAtgt                               <  2:1164936/150‑1 (MQ=255)
                                                                                                                   ttGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCAtgtg                              <  2:2710564/150‑1 (MQ=255)
                                                                                                                       cACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGATGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTaa                          >  1:1003638/1‑150 (MQ=255)
                                                                                                                       cACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGa                                                                   <  1:1423969/109‑1 (MQ=255)
                                                                                                                       cACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCAtgt                               <  1:1371026/145‑1 (MQ=255)
                                                                                                                       cACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCAtgt                               >  2:1371026/1‑145 (MQ=255)
                                                                                                                         cGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGc                        <  1:1010418/150‑1 (MQ=255)
                                                                                                                         cGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGc                        <  1:2746768/150‑1 (MQ=255)
                                                                                                                          ggAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCg                       >  2:2919562/1‑150 (MQ=255)
                                                                                                                           gAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGt                                                                                              <  1:905344/78‑1 (MQ=255)
                                                                                                                           gAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGt                                                                                              >  2:905344/1‑78 (MQ=255)
                                                                                                                           gAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGt                      >  1:1176781/1‑150 (MQ=255)
                                                                                                                                    ccGCACGGTGATCGCCAGCACACTCGTATGGTATTTGTCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTCGGc             >  1:2255001/1‑150 (MQ=255)
                                                                                                                                      gCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGa                                     <  2:257757/124‑1 (MQ=255)
                                                                                                                                      gCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGa                                     >  1:257757/1‑124 (MQ=255)
                                                                                                                                          ctttccatgCAGCACACCATACGAGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTCGGCACTGGa       <  1:739125‑M1/141‑1 (MQ=255)
                                                                                                                                           gTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTCGGCACTGGAt      <  1:1875431/150‑1 (MQ=255)
                                                                                                                                              aTCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTCGGCACTGGATcgc   >  2:2064732/1‑150 (MQ=255)
                                                                                                                                               tCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTCAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTCGGCACTGGATcgcg  >  2:1771008/1‑150 (MQ=255)
                                                                                                                                                cGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAg                                                                                 <  2:243345/70‑1 (MQ=255)
                                                                                                                                                cGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAg                                                                                 >  1:243345/1‑70 (MQ=255)
                                                                                                                                                  ccAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCg                                                                              <  2:2394241/71‑1 (MQ=255)
                                                                                                                                                  ccAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCg                                                                              >  1:2394241/1‑71 (MQ=255)
                                                                                                                                                   |                                                                                                                                                  
CGGCCAGGGGTACCGGTTAAAAAGGGCCGGGATTCTCGACATGTTTCCTCAGACGGCGCATGTCGAGGCCATGGCGTTATTCGAAGCGGGCTAGCTGACTGGCCCCTTGGTGCGGTTGCCACGGAAGGGCGGCCGCACGGTGATCGCCAGCACACTCGTATGGTGTGCTGCATGGAAAGGTAAAACAAAGATGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTCGGCACTGGATCGCG  >  NC_002947/1850767‑1851059

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.