| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2262205 = | 82 (0.720) | 7 (0.070) | 6/228 | NT | 8.9% | intergenic (+14/‑124) | fimV/truA | motility protein FimV/tRNA pseudouridine (38‑40)synthase |
| ? | NC_002947 | 2262242 = | 66 (0.620) | intergenic (+51/‑87) | fimV/truA | motility protein FimV/tRNA pseudouridine (38‑40)synthase | |||||
GGCGGTAGCGGTGTCGATGATGTCCAAGAGCATGAAACCTGTGGGGTGTACGGAATGGCGGGGATTATAACGACAACGGCAGCCTCGTAGGGCTGCCGCTGATTGCGCACTGCATGCGCGGGCCTCTTCGCGGGC‑G‑CGGTCAGCCCGCCAAGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2262361‑2262205‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagaggccCG‑‑C‑GCATGCAGTGCGCAATCAGCGGCAGCCCTACGAGGCTGCCGTTGTCGTTATAATCCCCGCCATTCCGTACACCCCACAGGTTTCATGCTCTTGGACATCATCGACACCGCTACCGCCGAATCCGCGGCCGAAGGCTACTCCCGCAT > NC_002947/2262242‑2262390 GGCGGTAGCGGTGTCGATGATGTCCAAGAGCATGAAACCTGTGGGGTGTACGGAATGGCGGGGATTATAACGACAACGGCAGCCTCGTAGGGCTGCCGCTGATTGCGCACTGCATGCGCGGGCCTCTTCGCGGGC‑G‑CGGTCAGCCCGCCA > 2:2790610/1‑150 CGGTAGCGGTGTCGATGATGTCCAAGAGCATGAAACCTGTGGGGTGTACGGAATGGCGGGGATTATAACGACAACGGCAGCCTCGTAGGGCTGCCGCTGATTGCGCACTGCATGCGCGGGCCTCTTCGCGGGC‑G‑CGGTCAGCCCGCCAAG < 1:2152152/150‑1 GGTAGCGGTGTCGATGATGTCCAAGAGCATGAAACCTGTGGGGTGTACGGAATGGCGGGGATTATAACGACAACGGCAGCCTCGTAGGGCTGCCGCTGATTGCGCACTGCATGCGCGGGCCTCTTCGCGGGC‑G‑CGGTCAGCCCGCCAAGA < 2:972943/150‑1 GGTAGCGGTGTCGATGATGTCCAAGAGCATGAAACCTGTGGGGTGTACGGAATGGCGGGGATTATAACGACAACGGCAGCCTCGTAGGGCTGCCGCTGATTGCGCACTGCATGCGCGGGCCTCTTCGCGGGC‑G‑CGGTCAGCCCGCCAAGA < 1:2070633/150‑1 GGTAGCGGTGTCGATGATGTCCAAGAGCATGAAACCTGTGGGGTGTACGGAATGGCGGGGATTATAACGACAACGGCAGCCTCGTAGGGCTGCCGCTGATTGCGCACTGCATGCGCGGGCCTCTTCGCGGGC‑G‑CGGTCAGCCCGCCAAGA < 1:2976560/150‑1 GGTAGCGGTGTCGATGATCTCCAAGAGCATGAAACCTGTGGGGTGTACGGAATGGCGGGGATTATAACGACAACGGCAGCCTCGTAGGGCTGCCGCTGATTGCGCACTGCATGCGCGGGCCTCTTCGCGGGC‑G‑CGGTCAGCCCGCCAAGA < 1:1692198/150‑1 GTCCAAGAGCATGAAACCTGTGGGGTGTACGGAATGGCGGGGATTATAACGACAACGGCAGCCTCGTAGGGCTGCCGCTGATTGCGCACTGCATGCGCGGGCCTCTTGGCGGGCTGACCG‑C‑GCCCGCGAAGAGGCCCG‑‑C‑GCATGCA < 2:2848127/146‑1 GTCCAAGAGCATGAAACCTGTGGGGTGTACGGAATGGCGGGGATTATAACGACAACGGCAGCCTCGTAGGGCTGCCGCTGATTGCGCACTGCATGCGCGGGCCTCTTGGCGGGCTGACCG‑C‑GCCCGCGAAGAGGCCCG‑‑C‑GCATGCA > 1:2848127/1‑146 GAATGGCGGGGATTATAACGACAACGGCAGCCTCGTAGGGCTGCCGCTGATTGCGCACTGCATGCGCGGGCCTCTTCGCGGGC‑G‑CGGTCAGCCCGCCAA < 1:2077426/99‑1 GAATGGCGGGGATTATAACGACAACGGCAGCCTCGTAGGGCTGCCGCTGATTGCGCACTGCATGCGCGGGCCTCTTCGCGGGC‑G‑CGGTCAGCCCGCCAA > 2:2077426/1‑99 GGGATTATAACGACAACGGCAGCCTCGTAGGGCTGCCGCTGATTGCGCACTGCATGCGCGGGCCTCTTCGCGGGC‑G‑CGGTCAGCCCGCCAAGA < 2:2786698/93‑1 GGGATTATAACGACAACGGCAGCCTCGTAGGGCTGCCGCTGATTGCGCACTGCATGCGCGGGCCTCTTCGCGGGC‑G‑CGGTCAGCCCGCCAAGA > 1:2786698/1‑93 GCACTGCATGCGCGGGCCTCTTCGCGGGC‑G‑CGGTCAGCCAGCCAAGAGGCCTGACCTGCTTGCAGTGCGCAATCAGCGGCAGCCCTACGAGGCTGCCGTTGTCGTTATAATCCCCGCCATTCCGTACACCCCACAGGTTTCATGCTCTTG > 2:1814912/1‑150 TCTTCGCGGGC‑G‑CGGTCAGCCCGCCAAGAGGCCCG‑‑C‑GCATGCAGTGCGCAATCAGCGGCAGCCCTACGAGGCTGCCGTTGTCGTTATAATCCCCGCCATTCCGTACACCCCACAGGTTTCATGCTCTTGGACATCATCGACACCG < 1:1534051/145‑1 TCTTCGCGGGC‑G‑CGGTCAGCCCGCCAAGAGGCCCG‑‑C‑GCATGCAGTGCGCAATCAGCGGCAGCCCTACGAGGCTGCCGTTGTCGTTATAATCCCCGCCATTCCGTACACCCCACAGGTTTCATGCTCTTGGACATCATCGACACCG > 2:1534051/1‑145 TCTTCGCGGGC‑G‑CGGTCAGCCCGCCAAGAGGCCCG‑‑C‑GCATGCAGTGCGCAATCAGCGGCAGCCCTACGAGGCTGCCGTTGTC > 2:1922117/1‑82 TCTTCGCGGGC‑G‑CGGTCAGCCCGCCAAGAGGCCCG‑‑C‑GCATGCAGTGCGCAATCAGCGGCAGCCCTACGAGGCTGCCGTTGTC < 1:1922117/82‑1 AGAGGCCCG‑‑C‑GCATGCAGTGCGCAATCAGCGGCAGCCCTACGAGGCTGCCGTTGTCGTTATAATCCCCGCCATTCCGTACACCCCACAGGTTTCATGCTCTTGGACATCATCGACACCGCTACCGCCGAATCCGCG > 2:144953/1‑136 AGAGGCCCG‑‑C‑GCATGCAGTGCGCAATCAGCGGCAGCCCTACGAGGCTGCCGTTGTCGTTATAATCCCCGCCATTCCGTACACCCCACAGGTTTCATGCTCTTGGACATCATCGACACCGCTACCGCCGAATCCGCG < 1:144953/136‑1 GGCCCG‑‑C‑GCATGCAGTGCGCAATCAGCGGCAGCCCTACGAGGCTGCCGTTGTCGTTATAATCCCCGCCATTCCGTACACCCCACAGGTTTCATGCTCTTGGACATCATCGACACCGCTACCGCCGAATCCGCGGCCGAAGGCTACTCCCG < 2:2070633/150‑1 GCCCG‑‑C‑GCATGCAGTGCGCAATCAGCGGCAGCCCTACGAGGCTGCCGTTGTCGTTATAATCCCCGCCATTCCGTACACCCCGCAGGTTTCATGCTCTTGGACATCATC < 2:2580869/108‑1 GCCCG‑‑C‑GCATGCAGTGCGCAATCAGCGGCAGCCCTACGAGGCTGCCGTTGTCGTTATAATCCCCGCCATTCCGTACACCCCGCAGGTTTCATGCTCTTGGACATCATC > 1:2580869/1‑108 GCCCG‑‑C‑GCATGCAGTGCGCAATCAGCGGCAGCCCTACGAGGCTGCCGTTGTCGTTATAATCCCCGCCATTCCGTACACCCCACAGGTTTCATGCTCTTGGACATCATCGACACCGCTACCGCCGAATCCGCGGCCGAAGGCTACTCCC > 1:60226/1‑148 GCCCG‑‑C‑GCATGCAGTGCGCAATCAGCGGCAGCCCTACGAGGCTGCCGTTGTCGTTATAATCCCCGCCATTCCGTACACCCCACAGGTTTCATGCTCTTGGACATCATCGACACCGCTACCGCCGAATCCGCGGCCGAAGGCTACTCCC < 2:60226/148‑1 CCG‑‑C‑GCATGCAGTGCGCAATCAGCGGCAGCCCTACGAGGCTGCCGTTGTCGTTATAATCCCCGCCATTCCGTACACCCCACAGGTTTCATGCTCTTGGACATCATCGACACCGCTACCGCCGAATCCGCGGCCGAAGGCTACTCCCGCAT > 1:2669619/1‑150 CCG‑‑C‑GCATGCAGTGCGCAATCAGCGGCAGCCCTACGAGGCTGCCGTTGTCGTTATAATCCCCGCCATTCCGTACACCCCACAGGTTTCATGCTCTTGGACATCATC > 1:872283/1‑106 CCG‑‑C‑GCATGCAGTGCGCAATCAGCGGCAGCCCTACGAGGCTGCCGTTGTCGTTATAATCCCCGCCATTCCGTACACCCCACAGGTTTCATGCTCTTGGACATCATC < 2:872283/106‑1 GGCGGTAGCGGTGTCGATGATGTCCAAGAGCATGAAACCTGTGGGGTGTACGGAATGGCGGGGATTATAACGACAACGGCAGCCTCGTAGGGCTGCCGCTGATTGCGCACTGCATGCGCGGGCCTCTTCGCGGGC‑G‑CGGTCAGCCCGCCAAGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2262361‑2262205‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagaggccCG‑‑C‑GCATGCAGTGCGCAATCAGCGGCAGCCCTACGAGGCTGCCGTTGTCGTTATAATCCCCGCCATTCCGTACACCCCACAGGTTTCATGCTCTTGGACATCATCGACACCGCTACCGCCGAATCCGCGGCCGAAGGCTACTCCCGCAT > NC_002947/2262242‑2262390 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |