| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2354594 | 125 (1.090) | 6 (0.060) | 4/228 | NT | 5.1% | intergenic (‑20/+38) | PP_2068/PP_2069 | multidrug MFS transporter membrane fusion protein/multidrug MFS transporter outer membrane protein |
| ? | NC_002947 | 3531425 = | 106 (0.990) | intergenic (+97/+86) | dnaEB/yeaE | error‑prone DNA polymerase/methylglyoxal reductase | |||||
TTCATGGTTGGTTTCCAATCTCGAATTGGGCCTGCTGGCTGTCGGTTGTGGGAGCCACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGGTGTATTCTTCGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2354438‑2354594‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggCATGCCCGCTCCCACAGGGATCGCGCCAGCTTTTAGAAATTGAGCAAGACAGCTGCTCCCAAAGGTCGCGTCCAGATTGCGCTCGCCTACACCATCGCCAACCGCTGCTTGCGCGTCGGTGCAGGGAACGCCCGGTCGATCGCCCGCAG > NC_002947/3531425‑3531573 TTCATGGTTGCTTTCCAATCTCGAATTGGGCCTGCTGGCTGTCGGTTGTCGGAGCCACTGTCTTGCCCAATTTCTAAAAGCTGGCGCGTGTGGGAGCGGGCTTGCCCGCCAACACGGGCGAAGCCCCTGCCATGCACCGCGGTGTGTTCT > 2:2505783/1‑150 CATGGTTGGTTTCCAATCTCGAATTGGGCCTGCTGGCTGTCGGTTGTGGGAGCCACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGGTGTATTCTTC < 1:2096617/150‑1 GTTGGTTTCCAATCTCGAATTGGGCCTGCTGGCTGTCGGTTGTGGGAGCCACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGGTGTATTCTTCGCGG > 2:960049/1‑150 GTTGGTTTCCAATCTCGAATTGGGCCTGCTGGCTGACGGTTGTGGGAGCCACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGGTGTATTCTTCGCGG < 2:1647813/150‑1 TGTCTTGCTCAATTTCTAAAAGCTGGCGCGTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGGTGTATTCTTCGCG > 1:342451/1‑97 TGTCTTGCTCAATTTCTAAAAGCTGGCGCGTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGGTGTATTCTTCGCG < 2:342451/97‑1 GCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCACAGGGATCGCGCCAGCTTTTAGAAATTGAG > 1:657860/1‑102 GCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCACAGGGATCGCGCCAGCTTTTAGAAATTGAG < 2:657860/102‑1 CCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCACAGGGATCGCGCCAGCTTTTAGAAATTGAGCAA < 2:1950008/100‑1 CCCGCGAACACGGGCGAAGCCCGTGCCAGCCACCGCGCTATATTCTTCGCGGGCATGCCCGCTCCCACAGGGATCGCGCCAGCTTTTAGAAATTGAGCAA > 1:1950008/1‑100 CCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGCCCGCTCCCCCAGGGATCGCGCCAGCTTTTAGAAATT > 1:1656473/1‑93 CCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGCCCGCTCCCCCAGGGATCGCGCCAGCTTTTAGAAATT < 2:1656473/93‑1 TTCGCGGGCATGCCCGCTCCCACAGGGATCGCGCCAGCTTTTAGAAATTGAGCAAGACAGCTGCTCCCAAAGGTCGCGTCCAGATTGCGCTCGCCTACACCATCGCCAACCGCTGCTTGCGCGTCGGTGCAGGGAACGCCCGGTCGATCG > 2:1665065/1‑150 CGCGGGCATGCCCGCTCCCACAGGGATCGCGCCAGCTTTTAGAAATTGAGCAAGACAGCTGCTCCCAAAGGTCGCGTCCAGATTGCGCTCGCCTACACCATCGCCAACCGCTGCTTGCGCGTCGGTGCAGGGAACGCCCGGTCGATCGCC < 2:1317786/150‑1 GGGCATGCCCGCTCCCACAGGGATCGCGCCAGCTTTTAGAAATTGAGCAAGACAGCTGCTCCCAAAGGTCGCGTCCAGATTGCGCTCGCCTACACCATCGCCAACCGCTGCTTGCGCGTCGGTGCAGGGAACGCCCGGT > 1:900318/1‑139 GGGCATGCCCGCTCCCACAGGGATCGCGCCAGCTTTTAGAAATTGAGCAAGACAGCTGCTCCCAAAGGTCGCGTCCAGATTGCGCTCGCCTACACCATCGCCAACCGCTGCTTGCGCGTCGGTGCAGGGAACGCCCGGT < 2:900318/139‑1 GGCATGCCCGCTCCCACAGGGATCGCGCCAGCTTTTAGAAATTGAGCAAGACAGCTGCTCCCAAAGGTCGCGTCCAGATTGCGCTCGCCTACACCATCGCCAACCGCTGCTTGCGCGTCGGTGCAGGGAACGCCCGGTCGATCGCCCGCA < 2:1373558/150‑1 GGCATGCCCGCTCCCACAGGGATCGCGCCAGCTTTTAGAAATTGAGCAAGACAGCTGCTCCCAAAGGTCGCGTCCAGATTGCGCTCGCCTACACCATCGCCAACCGCTGCTTGCGCGTCGGTGCAGGGAACGCCCGGTCGATCGCCCGCA < 2:865834/150‑1 GCATGCCCGCTCCCACAGGGATCGCGCCAGCTTTTAGACATTGAGCAAGACAGCTGCTCCCAAAGGTCGCGTCCAGATTGCGCTCGCCTACACCATCGCCAACCGCTGCTTGCGCGTCGGTGCAGGGAACGCCCGGTCGATCGCCCGCAG < 1:26291/150‑1 TTCATGGTTGGTTTCCAATCTCGAATTGGGCCTGCTGGCTGTCGGTTGTGGGAGCCACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGGTGTATTCTTCGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2354438‑2354594‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggCATGCCCGCTCCCACAGGGATCGCGCCAGCTTTTAGAAATTGAGCAAGACAGCTGCTCCCAAAGGTCGCGTCCAGATTGCGCTCGCCTACACCATCGCCAACCGCTGCTTGCGCGTCGGTGCAGGGAACGCCCGGTCGATCGCCCGCAG > NC_002947/3531425‑3531573 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |