| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2577157 = | 100 (0.870) | 9 (0.090) | 8/222 | NT | 9.9% | coding (1281/1776 nt) | PP_2259 | sigma‑54 dependent transcriptional regulator |
| ? | NC_002947 | 2577227 = | 73 (0.700) | coding (1211/1776 nt) | PP_2259 | sigma‑54 dependent transcriptional regulator | |||||
CGTTCACCGGCGCCCACCACAAGGGCAACCCGGGACTGATCCGCAAGGCCGACCACGGCATCCTGTTTCTGGATGAGATTGGCGACATGCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2577314‑2577157‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgggcagtggcATGTCGCCAATCTCATCCAGAAACAGGATGCCGTGGTCGGCCTTGCGGATCAGTCCCGGGTTGCCCTTGTGGTGGGCGCCGGTGAACGCGCCTTTGTCATAGCCGAACAGTTCCGACTCCACCAGTTCGGCCGGGATCGCCGCA > NC_002947/2577227‑2577370 CGTTCACCGGCGCCCACCACAAGGGCAACCCGGGACTGATCCGCAAGGCCGACCACGGCATCCTGTTTCTGGATGAGATTGGCGACATGCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGG < 1:308063/150‑1 TTCACCGGCGCCCACCACAAGGGCAACCCGGGACTGATCCGCAAGGCCGACCACGGCATCCTGTTTCTGGATGAGATTGGCGACATGCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGC > 2:2134111/1‑150 ACCGGCGCCCACCACAAGGGCAACCCGGGACTGATCCGCAAGGCCGACCACGGCATCCTGTTTCTGGATGAGATTGGCGACATGCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGT < 1:588161/150‑1 ACCGGCGCCCACCACAAGGGCAACCCGGGACTGATCCGCAAGGCCGACCACGGCATCCTGTTTCTGGATGAGATTGGCGACATGCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGT < 1:1342872/150‑1 CCGGCGCCCACCACAAGGGCAACCCGGGACTGATCCGCAAGGCCGACCACGGCATCCTGTTTCTGGATGAGATTGGCGACATGCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTG < 2:3063096/150‑1 CGGCGCCCACCACAAGGGCAACCCGGGACTGATCCGCAAGGCCGACCACGGCATCCTGTTTCTGGATGAGATTGGCGACATGCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGG > 1:622694/1‑150 CGGCGCCCACCACAAGGGCAACCCGGGACTGATCCGCAAGGCCGACCACGGCATCCTGTTTCTGGATGAGATTGGCGACATGCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGT > 1:1681866/1‑148 CGGCGCCCACCACAAGGGCAACCCGGGACTGATCCGCAAGGCCGACCACGGCATCCTGTTTCTGGATGAGATTGGCGACATGCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGT < 2:1681866/148‑1 GGCGCCCACCACAAGGGCAACCCGGGACTGATCCGCAAGGCCGACCACGGCATCCTGTTTCTGGATGAGATTGGCGACATGCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGC < 2:622694/150‑1 ATCCGCAAGGCCGACCACGGCATCCTGTTTCTGGATGAGATTGGCGACATGCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCT > 2:574557/1‑110 ATCCGCAAGGCCGACCACGGCATCCTGTTTCTGGATGAGATTGGCGACATGCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCT < 1:574557/110‑1 TGAGATTGGCGACATGCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTG > 2:2477029/1‑83 TGAGATTGGCGACATGCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTG < 1:2477029/83‑1 ATGCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGCATGTCGCCAATCTCATCCAGAAACAGGATGCCGTGGTCGGCCTTGCGGATCAGTCCCGGGTTGCCCTTGTGGTGGGCG > 1:2302821/1‑150 CCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGCATGTCGCCAATCTCATCCAGAAACAGGATGCCGTGGTCGGCCTTGCGGATCAGTCCCGGGTTGCCCTTGTGGTGGGCGCCG > 1:956225/1‑150 CCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGCATGTCGCCAATCTCATCCAGAAACAGGATGCCGTGGTCGGCCTTGCGGATCAGTCCCGGGTTGCCCTTGTGGTGGGCGCCG > 2:1373495/1‑150 ACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGCATGTCGCCAATCTCATCCAGAAACAGGATGCCGTGGTCGGCCTTGCGGATCAGTCCCGGGTTGCCCTTGTGGTGGGCGCCGGT > 1:1385818/1‑150 ACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGCATGTCGCCAATCTCATCCTTTGGTATGATGCCGTGGTCGGCCTTGCGGATCAGTCCCGGGTTGCCCTTGTGGTGGGCGCCGGTGAACGCG > 1:1725684/1‑150 CCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGCATGTCGCCAATCTCATCCAGAAACAGGATGCCGTGGTCGGCCTTGCGGATCAGTCCCGGGTTGCCCTTGTGGTGGGCGCCGGTGAACGCGCCTTTGT < 2:1385818/150‑1 CTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGCATGTCGCCAATCTCATCCAGAAACAGGATGCCGTGGTCGGCCTTGCGGATCAGTCCCGGGTTGCCCTTGTGGTGGGCGCCGGTGAACGCGCCTTTGTCATAG < 1:1373495/150‑1 GTCGCGCAGCATCCAGCCGCTGGGCAGTGGCATGTCGCCAATCTCATCCAGAAACAGGATGCCGTGGTCGGCCTTGCGGATCAGTCCCGGGTTGCCCTTGTGGTGGGCGCCGGTGAACGCGCCTTTGTCATAGCCGAACAGTTCCGACTC > 2:314564/1‑150 CGCAGCATCCAGCCGCTGGGCAGTGGCATGTCGCCAATCTCATCCAGAAACAGGATGCCGTGGTCGGCCTTGCGGATCAGTCCCGGGTTGCCCTTGTGGTGGGCGCCGGTGAACGCGCCTTTGTCATCGCCGAACAGTTCCGACTCCACC < 2:1725684/150‑1 GGGCAGTGGCATGTCGCCAATCTCATCCAGAAACAGGATGCCGTGGTCGGCCTTGCGGATCAGTCCCGGGTTGCCCTTGTGGTGGGCGCCGGTGAACGCGCCTTTGTCATAGCCGAACAGTTCCGACTCCACCAGTTCGGCCGGGATCGC < 1:3063096/150‑1 GCAGTGGCATGTCGCCAATCTCATCCAGAAACAGGATGCCGTGGTCGGCCTTGC < 2:1763297/54‑1 GCAGTGGCATGTCGCCAATCTCATCCAGAAACAGGATGCCGTGGTCGGCCTTGC > 1:1763297/1‑54 AGTGGCATGTCGCCAATCTCATCCAGAAACAGGATGCCGTGGTCGGCCTTGCGGATCAGTCCCGGGTTGCCCTTGTGGTGGGCGCCGGTGAACGCGCCTTTGTCATAGCCGAACAGTTCCGACTCCACCAGTTCGGCCGGGATCGCCGCA > 2:1705873/1‑150 CGTTCACCGGCGCCCACCACAAGGGCAACCCGGGACTGATCCGCAAGGCCGACCACGGCATCCTGTTTCTGGATGAGATTGGCGACATGCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2577314‑2577157‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgggcagtggcATGTCGCCAATCTCATCCAGAAACAGGATGCCGTGGTCGGCCTTGCGGATCAGTCCCGGGTTGCCCTTGTGGTGGGCGCCGGTGAACGCGCCTTTGTCATAGCCGAACAGTTCCGACTCCACCAGTTCGGCCGGGATCGCCGCA > NC_002947/2577227‑2577370 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |