| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2577167 | 104 (0.910) | 7 (0.070) | 7/222 | NT | 7.7% | coding (1271/1776 nt) | PP_2259 | sigma‑54 dependent transcriptional regulator |
| ? | NC_002947 | = 2577215 | 73 (0.700) | coding (1223/1776 nt) | PP_2259 | sigma‑54 dependent transcriptional regulator | |||||
TCAGCGCGTTCGCGCAGGGGAGGCAGCACCAGCGTCAGGCCGGCGATGCGGTAGTACAGGTCCTGGCGAAAGCGCCCGGCGCGCACTTCGTCGGCCAGGTTGCGATTGCTCGCCGACACCACGCGGATATCCACCGGCACCGGTTCGCCACTGCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2577011‑2577167‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccactgcccaCCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGCGAACCGGTGCCGGTGGATATCCGCGTGGTGTCGGCGAGCAATCGCAACCTGGCCGACGAAGTGCGCGCCGGGCGCTTTCGCCAGGACCTG < NC_002947/2577215‑2577067 TCAGCGCGTTCGCGCAGGGGAGGCAGCACCAGCGTCAGGCCGGCGATGCGGTAGTACAGGTCCTGGCGAAAGCGCCCGGCGCGCACTTCGTCGGCCAGGTTGCGATTGCTCGCCGACACCACGCGGATATCCACCGGCACCGGTTCGCCA > 1:650959/1‑150 CAGCGCGTTCGCGCAGGGGAGGCAGCACCAGCGTCAGGCCGGCGATGCGGTAGTACAGGTCCTGGCGAAAGCGCCCGGCGCGCACTTCGTCGGCCAGGTTGCGATTGCTCGCCGACACCACGCGGATATCCACCGGCACCGGTTCGCCAC < 1:1901144/150‑1 AGCGCGTTCGCGCAGGGGAGGCAGCACCAGCGTCAGGCCGGCGATGCGGTAGTACAGGTCCTGGCGAAAGCGCCCGGCGCGCACTTCGTCGGCCAGGTTGCGATTGCTCGCCGACACCACGCGGATATCCACCGGCACCGGTTCGCCACT < 1:742259/150‑1 GCGCGTTCGCGCAGGGGAGGCAGCACCAGCGTCAGGCCGGCGATGCGGTAGTACAGGTCCTGGCGAAAGCGCCCGGCGCGCACTTCGTCGGCCAGGTTGCGATTGCTCGCCGACACCACGTGGATATCCACCGGCACCGGTTCGCCACTG < 1:1769493/150‑1 GCGCGTTCGCGCAGGGGAGGCAGCACCAGCGTCAGGCCGGCGATGCGGTAGTACAGGTCCTGGCGAAAGCGCCCGGCGCGCACTTCGTCGGCCAGGTTGCGATTGCTCGCCGACACCACGCGGATATCCACCGGCACCGGTTCGCCACTG < 1:1151841/150‑1 CGCGTTCGCGCAGGGGAGGCAGCACCAGCGTCAGGCCGGCGATGCGGTAGTACAGGTCCTGGCGAAAGCGCCCGGCGCGCACTTCGTCGGCCAGGTTGCGATGGCTCGCCGACACCACGCGGATATCCACCGGCACCGGTTCGCCACTGC < 1:2856627/150‑1 GTTCGCGCAGGGGAGGCAGCACCAGCGTCAGGCCGGCGATGCGGTAGTACAGGTCCTGGCGAAAGCGCCCGGCGCGCACTTCGTCGGCCAGGTTGCGATTGCTCGCCGACACAACGCGGATATCCACCGGCACCGGTTCGCCACTGCCCA < 1:2488736/150‑1 GTAGTACAGGTCCTGGCGAAAGCGCCCGGCGCGCACTTCGTCGGCCAGGTTGCGATTGCTCGCCGACACCACGCGGATATCCACCGGCACCGGTTCGCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCA < 1:1645348/150‑1 CAGGTCCTGGCGAAAGCGCCCGGCGCGCACTTCGTCGGCCAGGTTGCGATTGCTCGCCGACACCACGCGGATATCCACCGGCACCGGTTTGCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCT > 2:2292235/1‑150 CAGGTCCTGGCGAAAGCGCCCGGCGCGCACTTCGTCGGCCAGGTTGCGATTGCTCGCCGACACCACGCGGATATCCACCGGCACCGGTTCGCCA > 2:2369590/1‑94 CAGGTCCTGGCGAAAGCGCCCGGCGCGCACTTCGTCGGCCAGGTTGCGATTGCTCGCCGACACCACGCGGATATCCACCGGCACCGGTTCGCCA < 1:2369590/94‑1 AGCGCCCGGCGCGCACTTCGTCGGCCAGGTTGCGATTGCTCGCCGACACCACGCGGATATCCACCGGCACCGGTTTGCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGCGAAC < 1:2292235/150‑1 GCACTTCGTCGGCCAGGTTGCGATTGCTCGCCGACACCACGCGGATATCCACCGGCACCGGTTCGCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGC > 1:2395386/1‑134 GCACTTCGTCGGCCAGGTTGCGATTGCTCGCCGACACCACGCGGATATCCACCGGCACCGGTTCGCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGC < 2:2395386/134‑1 GCCAGGTTGCGATTGCTCGCCGACACCACGCGGATATCCACCGGCACCGGTTCGCTACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGG < 1:1592812/122‑1 GCCAGGTTGCGATTGCTCGCCGACACCACGCGGATATCCACCGGCACCGGTTCGCTACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGG > 2:1592812/1‑122 GCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGCGAACCGGTGCCGGTGGATATCCGCGTGGTGTCGGCGAGCAATCGCAACCTGGCCGACGAAGTGCGCGCCGGGCGCTTTCG > 1:2914935/1‑150 CCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGCGAACCGGTGCCGGTGGATATCCGCGTGGTGTCGGCGAGCAATCGCAACCTGGCCGACGAAGTGCGCGCCGGGCGCGTTCGC > 2:1856175/1‑150 CACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGCGAACCGGTGCCGGTGGATATCCGCGTGGTGTCGGCGAGCAATCGCAACCTGGCCGACGAAGTGCGCGCCGGGCGCTTTCGCC > 2:2934314/1‑150 CACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGCGAACCGGTGCCGGTGGATATCCGCGTGGTGTCGGCGAGCAATCGCAACCTGGCCGACGAAGTGCGCGCCGGGCGCTTTCGCC > 1:1917341/1‑150 CACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGCGAACCGGTGCCGGTGGATATCCGCGTGGTGTCGGCGAGCAATCGCAACCTGGCCGACGAAGTGCGCGCCGGGCGCTTTCGCC > 2:25956/1‑150 ACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGCGAACCGGTGCCGGTGGATATCCGCGTGGTGTCGGCGAGCAATCGCAACCTGGCCGACGAAGTGCGCGCCGGGCGCTTTCGCCA < 2:1554879/150‑1 ACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGCGAACCGGTGCCGGTGGATATCCGCGTGGTGTCGGCGAGCAATCGCAACCTGGCCGACGAAGTGCGCGCCGGGCGCTTTCGCCA < 2:1682992/150‑1 CTGCCCACCCAGGCCCGCCTGCTGCGTGTACTGCAGTCGCACAGCATCCAGCCGCTGGGCAGTGGCGAACCGGGGCCGGTGGGTATCCGCGTGGTGTCGGCGAGCAATCGCAACCTGGCCGTCCAAGTGCTCGCCTGGCGCTTTAGCCAG > 2:630285/1‑150 CTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGCGAACCGGTGCCGGTGGATATCCGCGTGGTGTCGGCGAGCAATCGCAACCTGGCCGACGAAGTGCGCGCCGGGCGCTTTCGCCAG < 1:2125653/150‑1 CCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGCGAACCGGTGCCGGTGGATATCCGCGTGGTGTCGGCGAGCAATC > 1:70612/1‑106 CCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGCGAACCGGTGCCGGTGGATATCCGCGTGGTGTCGGCGAGCAATC < 2:70612/106‑1 CCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGCGAACCGGTGCAGGTGTTGAGGCGCGTGGTGTCGGCGAGCAATCGCAACCTGGCCGACGAAGTGCGCGCCGGGCGCTTTCGCCAGGAC > 2:2256197/1‑150 CCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGCGAACCGGTGCCGGTGGATATCCGCGTGGTGTCGGCGAGCAATCGCAACCTGGCCGACGAAGTGCGCGCCGGGCGCTTTCGCCAGGACC > 2:2033804/1‑150 CACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGCGAACCGGTGCCGGTGGATATCCGCGTGGTGTCGGCGAGCAATCGCAACCTGGCCGACGAAGTGCGCGCCGGGCGCTTTCGCCAGGACCT > 1:759265/1‑150 CACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGCGAACCGGTGCCGGTGGATATCCGCGTGGTGTCGGCGAGCAATCGCAACCTGGCCGACGAAGTGCGCGCCGGGCGCTTTC < 2:1947368/140‑1 CACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGCGAACCGGTGCCGGTGGATATCCGCGTGGTGTCGGCGAGCAATCGCAACCTGGCCGACGAAGTGCGCGCCGGGCGCTTTC > 1:1947368/1‑140 ACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGCGAACCGGTGCCGGTGGATATCCGCGTGGTGTCGGCGAGCAATCGCAACCTGGCCGACGAAGTGCGCGCCGGGCGCTTTCGCCAGGACCTG > 2:1892733/1‑150 ACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGCGAACCGGTGCCGGTGGATATCCGCGTGGTGTCGGCGAGCAATCGCAACCTGGCCGACGAAGTGCGCGCCGGGCGCTTTCGCCAGGACCTG > 1:181297/1‑150 ACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGCGAACCGGTGCCGGTGGATATCCGCGTGGTGTCGGCGAGCAATCGCAACCTGGCCGACGAAGTGCGCGCCGGGCGCTTTCGCCAGGACCTG > 1:1172203/1‑150 TCAGCGCGTTCGCGCAGGGGAGGCAGCACCAGCGTCAGGCCGGCGATGCGGTAGTACAGGTCCTGGCGAAAGCGCCCGGCGCGCACTTCGTCGGCCAGGTTGCGATTGCTCGCCGACACCACGCGGATATCCACCGGCACCGGTTCGCCACTGCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2577011‑2577167‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccactgcccaCCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGCGAACCGGTGCCGGTGGATATCCGCGTGGTGTCGGCGAGCAATCGCAACCTGGCCGACGAAGTGCGCGCCGGGCGCTTTCGCCAGGACCTG < NC_002947/2577215‑2577067 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |