| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2813357 = | 103 (0.900) | 5 (0.050) | 5/232 | NT | 5.1% | coding (499/1017 nt) | pheS | phenylalanine‑‑tRNA ligase subunit alpha |
| ? | NC_002947 | 2813386 = | 90 (0.830) | coding (528/1017 nt) | pheS | phenylalanine‑‑tRNA ligase subunit alpha | |||||
ATATCGCGATCGATCAGCAGGCCTTCGACCTGGTGGAACATCGGCGAGTGGGTGATATCCGAGTCGCAGCGGTATACGCGGCCCGGGCACACAATGCGAATGGGCGGCTGGGTGGACTCCATGGTCCGCACCTGCACCGGCGAGGTGTGGGTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2813511‑2813357‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgcgGACCATGGAGTCCACCCAGCCGCCCATTCGCATTGTGTGCCCGGGCCGCGTATACCGCTGCGACTCGGATATCACCCACTCGCCGATGTTCCACCAGGTCGAAGGCCTGCTGATCGATCGCGATATCAACTTCGCCGACCTCAAGGGC > NC_002947/2813386‑2813533 ATATCGCGATCGATCAGCAGGCCTTCGACCTGGTGGAACATCGGCGAGTGGGTGATATCCGAGTCGCAGCGGTATACGCGGCCCGGGCACACAATGCGAATGGGCGGCTGGGTGGACTCCATGGTCCGCACCTGCACCGGCGAGGTGTGG < 1:2154451/150‑1 ATCGCGATCGATCAGCAGGCCTTCGACCTGGTGGAACATCGGCGAGTGGGTGATATCCGAGTCGCAGCGGTATACGCGGCCCGGGCACACAATGCGAATGGGCGGCTGGGTGGACTCCATGGTCCGCACCTGCACCGGCGAGGTGTGGGT < 1:1555595/150‑1 ATCGCGATCGATCAGCAGGCCTTCGACCTGGTGGAACATCGGCGAGTGGGTGATATCCGAGTCGCAGCGGTATACGCGGCCCGGGCACACAATGCGAATGGGCGGCTGGGTGGACTCCATGGTCCGCACCTGCACCGGCGAGGTGTGGGT > 1:707432/1‑150 TCGCGATCGATCAGCAGGCCTTCGACCTGGTGGAACATCGGCGAGTGGGTGATATCCGAGTCGCAGCGGTATACGCGGCCCGGGCACACAATGCGAATGGGCGGCTGGGTGGAGTCCATGGTCCGCACCTGCACCGGCGAGGTGTGGGTG > 2:2207629/1‑150 CGCGATCGATCAGCAGGCCTTCGACCTGGTGGAACATCGGCGAGTGGGTGATATCCGAGTCGCAGCGGTATACGCGGCCCGGGCACACAATGCGAATGGGCGGCTGGGTGGACTCCATGGTCCGCACCTGCACCGGCGAGGTGTGGGTGC < 1:3029926/150‑1 TCCATGGTCCGCACCTGCACCGGCGAGGTGTGGGTGCGGACCATGGAGTCCACCCAGCCGCCCATTCGCATTGTGTGCCCGGGCCGCGTATACCGCTGCGACTCGGATATCAC > 1:2512749/1‑113 TCCATGGTCCGCACCTGCACCGGCGAGGTGTGGGTGCGGACCATGGAGTCCACCCAGCCGCCCATTCGCATTGTGTGCCCGGGCCGCGTATACCGCTGCGACTCGGATATCAC < 2:2512749/113‑1 ATGGTCCGCACCTGCACCGGCGAGGTGTGGGTGCGGACCATGGAGTCCACCCAGCCGCCCATTCGCATTGTGTGCCCGGGCCGCGTATACCGCTGCGACTC > 2:2925815/1‑101 ATGGCCCGCACCTGCACCGGCGAGGTGTGGGTGCGGACCATGGAGTCCACCCAGCCGCCCGTTCGCATTGTGTGCCCGGGCCGCGTATACCGCTGCGACTC < 1:2925815/101‑1 GCACCTGCACCGGCGAGGTGTGGGTGCGGACCATGGAGTCCACCCAGCCGCCCATTCGCATTGTGTGCCCGGGCCGCGTATACCGCTGCGACTCGGATATCACCCACTCGCCGATGTTCCACCAGGTCGAAGGCCTGCTGATCGATCGCG > 1:1735022/1‑150 GGTGCGGACCATGGAGTCCACCCAGCCGCCCATTCGCATTGTGTGCCCGGGCCGCGTATACCGCTGCGACTCGGATATCACCCACTCGCCGATGTTCCACCAGGTCGAAGGCCTGCTGATCGATCGCGATATCAACTTCGCCGACCTCAA < 2:2113165/150‑1 CGGACCATGGAGTCCACCCAGCCGCCCATTCGCATTGTGTGCCCGGGCCGCGTATACCGCTGCGACTCGGATATCACCCACTCGCCGATGTTCCACCAGGTCGAAGGCCTGCTGATCGATCGCGATATCAACTTCGCCGACCTCAAGGGC < 2:958664/150‑1 ATATCGCGATCGATCAGCAGGCCTTCGACCTGGTGGAACATCGGCGAGTGGGTGATATCCGAGTCGCAGCGGTATACGCGGCCCGGGCACACAATGCGAATGGGCGGCTGGGTGGACTCCATGGTCCGCACCTGCACCGGCGAGGTGTGGGTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2813511‑2813357‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgcgGACCATGGAGTCCACCCAGCCGCCCATTCGCATTGTGTGCCCGGGCCGCGTATACCGCTGCGACTCGGATATCACCCACTCGCCGATGTTCCACCAGGTCGAAGGCCTGCTGATCGATCGCGATATCAACTTCGCCGACCTCAAGGGC > NC_002947/2813386‑2813533 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |