| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3522759 | 107 (0.930) | 6 (0.060) | 5/214 | NT | 5.8% | intergenic (+503/‑194) | PP_5584/PP_3113 | hypothetical protein/transposase |
| ? | NC_002947 | = 3522816 | 100 (1.000) | intergenic (+560/‑137) | PP_5584/PP_3113 | hypothetical protein/transposase | |||||
CTGGCCGCGGCCGTCCCCGGCAATGAGTCCTCGAAGGCCAGCGCTTGCCCGGCCTCGACACCCAGCCGCTGCAGGCCGGTGAGGTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3522596‑3522759‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccaggcccatggcATCGGCATGTGCGTGGTGACCAACGCACCGCGGCTGAACGCCGAGCACATGCTGAACGCCATGGGCCTGGGCCAGCACTTTGAACATGTGCTGGTGGCCGAAGAGCTGGCACGGCCCAAACCGGACCCGCTGCCCTACCTCACCG < NC_002947/3522816‑3522672 CTGGCCGCGGCCGTCCCCGGCAATGAGTCCTCGAAGGCCAGCGCTTGCCCGGCCTCGACACCCAGCCGCTGCAGGCCGGTGAGGTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGG < 2:1627709/150‑1 GCCGCGGCCGTCCCCGGCAATGAGTCCTCGAAGGCCAGCGCTTGCCCGGCCTCGACACCCAGCCGCTGCAGGCCGGTGAGGTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCC > 2:1073373/1‑150 GCGGCCGTCCCCGGCAATGAGTCCTCGAAGGCCAGCGCTTGCCCGGCCTCGACACCCAGCCGCTGCAGGCCGGTGAGGTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGG < 1:247487/150‑1 CGGCCGTCCCCGGCAATGAGTCCTCGAAGGCCAGCGCTTGCCCGGCCTCGACACCCAGCCGCTGCAGGCCGGTGAGGTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGC < 1:2885331/150‑1 CGTCCCCGGCAATGAGTCCTCGAAGGCCAGCGCTTGCCCGGCCTCGACACCCAGCCGCTGCAGGCCGGTGAGGTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCAT < 2:1910782/150‑1 GTCCCCGGCAATGAGTCCTCGAAGGCCAGCGCTTGCCCGGCCTCGACACCCAGCCGCTGCAGGCCGGTGAGGTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATG < 2:91979/150‑1 CCCCGGCAATGAGTCCTCGAAGGCCAGCGCTTGCCCGGCCTCGACACCCAGCCGCTGCAGGCCGGTGAGGTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGC < 1:304419/150‑1 ATGAGTCCTCGAAGGCCAGCGCTTGCCCGGCCTCGACACCCAGCCGCTGCAGGCCGGTGAGGTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCATCGGCAT > 2:768396/1‑150 CTCGAAGGCCAGCGCTTGCCCGGCCTCGACACCCAGCCGCTGCAGGCCGGTGAGGTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCC < 1:320708/129‑1 CTCGAAGGCCAGCGCTTGCCCGGCCTCGACACCCAGCCGCTGCAGGCCGGTGAGGTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCC > 2:320708/1‑129 CTTGCCCGGCCTCGACACCCAGCCGCTGCAGGCCGGTGAGGTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGC < 1:1591185/121‑1 CTTGCCCGGCCTCGACACCCAGCCGCTGCAGGCCGGTGAGGTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGC > 2:1591185/1‑121 AGGCCGGTGAGGTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGACCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCATCGGCATGTGCGTGGTGACCAACGCACCGCGGCTGAACGCCGAGCACATGCTGAACG > 2:1867428/1‑150 GGTGAGGTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCATCGGCATGTGCGTGGTGACCAACGCACCGCGGCTGAACGCCGAGCACATGCTGAACGCCATG < 1:768396/150‑1 GTGAGGTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGACCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCATCGGCATGTGCGTGGTGACCAACGCACCGCGGCTGAACGCCGAGCACATGCTGAACGCCATGG < 1:1867428/150‑1 GTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCATCGGCATGTGCGTGGTGACCAACGCACCGCGGCTGAACGCCGAGCACATGCTGAACGCCATGG < 2:2571911/145‑1 GTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCATCGGCATGTGCGTGGTGACCAACGCACCGCGGCTGAACGCCGAGCACATGCTGAACGCCATGG > 1:2571911/1‑145 TCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGC > 2:1111535/1‑61 TCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGC < 1:1111535/61‑1 CCAGGCCCATGGCATCGGCATGTGCGTGGTGACCAACGCACCGCGGCTGAACGCCGAGCACATGCTGAACGCCATGGGCCTGGGCCAGCACTTTGAACATGTGCTGGTGGCCGAAGAGCTGGCACGGCCCAAACCGGACCCGCTGCCCTA > 1:1386100/1‑150 CAGGCCCATGGCATCGGCATGTGCGTGGTGACCAACGCACCGCGGCTGAACGCCGAGCACATGCTGAACGCCATGGGCCTGGGCCAGCACTTTGAACATGTGCTGGTGGCCGAAGAGCTGGCACGGCCCAAACCGGACCCGCTGCCCTAC > 1:893465/1‑150 CAGGCCCATGGCATCGGCATGTGCGTGGTGACCAACGCACCGCGGCTGAACGCCGAGCACATGCTGAACGCCATGGGCCTGGGCCAGCACTTTGAACATGTGCTGGTGGCCGAAGAGCTGGCACGGCCCAAACCGGACCCGCTGCCCTAC < 1:1871596/150‑1 ATGGCATCGGCATGTGCGTGGTGACCAACGCACCGCGGCTGAACGCCGAGCACATGCTGAACGCCATGGGCCTGGGCCAGCACTTTGAACATGTGCTGGTGGCCGAAGAGCTGGCACGGCCCAAACCGGACCCGCTGCCCTACCTCACCG > 2:1589746/1‑150 CTGGCCGCGGCCGTCCCCGGCAATGAGTCCTCGAAGGCCAGCGCTTGCCCGGCCTCGACACCCAGCCGCTGCAGGCCGGTGAGGTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3522596‑3522759‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccaggcccatggcATCGGCATGTGCGTGGTGACCAACGCACCGCGGCTGAACGCCGAGCACATGCTGAACGCCATGGGCCTGGGCCAGCACTTTGAACATGTGCTGGTGGCCGAAGAGCTGGCACGGCCCAAACCGGACCCGCTGCCCTACCTCACCG < NC_002947/3522816‑3522672 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |