| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4476352 = | 112 (0.980) | 7 (0.060) | 6/232 | NT | 9.3% | intergenic (‑57/‑119) | PP_3966/PP_3967 | transposase/MutT/nudix family protein |
| ? | NC_002947 | = 4486419 | 30 (0.280) | intergenic (+76/‑21) | PP_3978/PP_3979 | hypothetical protein/transposase | |||||
GGTTCCTCCGGTATGAACGGAAGGCCATACCTGCATCTGGAAGTTCACTCCGCTCGGTGAATGGCCTGTCGGGTCGTTGCACCAACCTCTCAGCATGATTCCAGCCGCTTCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4476506‑4476352‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taagggTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGCCGGACGCTTACGCCATGTAGCCCACTGTCGGTATCGATCCCGTCTTAAAGCCACGGTGCAAATGCTCCATCAGGGCGGCT < NC_002947/4486419‑4486271 GGTTCCTCCGGTATGAACGGAAGGCCATACCTGCATCTGGACGTTCACTCCGCTCGGTGAATGGCCTGTCGGGTCGTTGCACCAACCTCTCAGCATGATTCCAGCCGCTTCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATT > 1:1391175/1‑150 CCTCCGGTATGAACGGAAGGCCATACCTGCATCTGGAAGTTCACTCCGCTCGGTGAATGGCCTGTCGGGTCGTTGCACCAACCTCTCAGCATGATTCCAGCCGCTTCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGG < 2:2759724/150‑1 TGCATCTGGAAGTTCACTCCGCTCGGTGAATGGCCTGTCGGGTCGTTGCACCAACCTCTCAGCATGATTCCAGCCGCTTCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCTTAAAAATACGCG > 2:203280/1‑150 TCTGGAAGTTCACTCCGCTCGGTGAATGGCCTGTCGGGTCGTTGCACCAACCTCTCAGCATGATTCCAGCCGCTTCGGAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCTTAAAAATACGCGGACA < 1:203280/150‑1 CTCTCAGCATGATTCCAGCCGCTTCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAA > 1:1290121/1‑112 CTCTCAGCATGATTCCAGCCGCTTCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAA < 2:1290121/112‑1 GTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTT < 1:2353581/79‑1 GTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTT > 2:2353581/1‑79 TCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGCCGGACGCTTACGCCATGTAGCCCACTGTCGGTATCGATCCCGTCTTAAAGCCACGGTGCAAATGCTC > 2:1856878/1‑150 ATTAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAAT > 2:353495/1‑52 ATTAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAAT < 1:353495/52‑1 AAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGCCGGACGCTTACGCCATGTAGCCCACTGTCGGTATCGATCCCGTCTTAAAGCCACGGTGCAAATGCTCCATCAGGGC < 1:2602436/150‑1 GGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGCCGGACGCTTACGCCATGTAGCCCACTGTCGTTATCGATCCCGTCTTAAAGCTACGGTGCAAAGGCGCCATCAGcgggg > 2:2173290/1‑145 GGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGCCGGACGCTTACGCCATGTAGCCCACTGTCGGTATCGATCCCGTCTTAAAGCCACGGTGCAAATGCTCCATCAGGGCGG > 1:2697767/1‑150 GGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGCCGGACGCTTACGCCATGTAGCCCACTGTCGGTATCGATCCCGTCTTAAAGCCACGGTGCAAATGCTCCATCAGGGCGG < 1:2554895/150‑1 GGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGCCGGACGCTTACGCCATGTAGCCCACTGTCGGTATCGATCCCGTCTTAAAGCCACGGTGCAAATGCTCCATCAGGGCGGC > 1:50431/1‑150 GGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGCCGGACGCTTACGCCATGTAGCCCACTGTCGGTATCGATCCCGTC > 2:1683326/1‑115 GGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGCCGGACGCTTACGCCATGTAGCCCACTGTCGGTATCGATCCCGTC < 1:1683326/115‑1 GTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGCCGGACGCTTACGCCATGTAGCCCACTGTCGGTATCGATCCCGTCTTAAAGCCACGGTGCAAATGCTCCATCAGGGCGGCT > 1:2303160/1‑150 GTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAA < 1:2956908/59‑1 GTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAA > 2:2956908/1‑59 GGTTCCTCCGGTATGAACGGAAGGCCATACCTGCATCTGGAAGTTCACTCCGCTCGGTGAATGGCCTGTCGGGTCGTTGCACCAACCTCTCAGCATGATTCCAGCCGCTTCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4476506‑4476352‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taagggTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGCCGGACGCTTACGCCATGTAGCCCACTGTCGGTATCGATCCCGTCTTAAAGCCACGGTGCAAATGCTCCATCAGGGCGGCT < NC_002947/4486419‑4486271 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |