New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4476352 =	112 (0.980)	7 (0.060)	6/232	NT	9.3%	intergenic (‑57/‑119)	PP_3966/PP_3967	transposase/MutT/nudix family protein
	?	NC_002947	= 4486419	30 (0.280)					intergenic (+76/‑21)	PP_3978/PP_3979	hypothetical protein/transposase

AGCCGCCCTGATGGAGCATTTGCACCGTGGCTTTAAGACGGGATCGATACCGACAGTGGGCTACATGGCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATCGCCAGGATTTCTATGCGCCAACGAAGCTCTTATCCGAAACCGTTCAAAGCCCAGGTCGTTCAGGAATGCCTGCAACCTGGCGCAACCGTGTCCAGTGTCGCCATCAACCACGGCAT  >  NC_002947/4486271‑4486543                                                                                                                                                     |                                                                                                                             aGCCGCCCTGATGGAGCATTTGCACCGTGGCTTTAAGACGGGATCGATACCGACAGTGGGCTACATGGCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCAc                                                                                                                             >  1:2303160‑M2/1‑149 (MQ=255)  gccgccCTGATGGAGCATTTGCACCGTGGCTTTAAGACGGGATCGATACCGACAGTGGGCTACATGGCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCAcc                                                                                                                            >  1:50431‑M2/1‑148 (MQ=255)   ccgccCTGATGGAGCATTTGCACCGTGGCTTTAAGACGGGATCGATACCGACAGTGGGCTACATGGCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCAccc                                                                                                                           <  1:2554895‑M2/150‑4 (MQ=255)   ccgccCTGATGGAGCATTTGCACCGTGGCTTTAAGACGGGATCGATACCGACAGTGGGCTACATGGCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCAccc                                                                                                                           >  1:2697767‑M2/1‑147 (MQ=255)   ccccgctgatgGCGCCTTTGCACCGTAGCTTTAAGACGGGATCGATAACGACAGTGGGCTACATGGCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCAccc                                                                                                                           >  2:2173290‑M2/6‑147 (MQ=255)     gccCTGATGGAGCATTTGCACCGTGGCTTTAAGACGGGATCGATACCGACAGTGGGCTACATGGCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCAccctt                                                                                                                         <  1:2602436‑M2/150‑6 (MQ=255)       ccagATGGAGCATTTGCACCGTGGCTTTAAGACGGGATCGATACCGACAGTGGGCTACATGGCGTGAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATCTTTAAGCGGACGCGATCACCCTTAt                                                                                                                       >  2:1224025/4‑150 (MQ=255)        cTGATGGAGCATTTGCACCGTGGCTTTAAGACGGGATCGATACCGACAGTGGGCTACATGGCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATc                                                                                                                      <  2:1311174/150‑1 (MQ=255)        cTGATGGAGCATTTGCACCGTGGCTTTAAGACGGGATCGATACCGACAGTGGGCTACATGGCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATc                                                                                                                      <  2:330150/150‑1 (MQ=255)           aTGGAGCATTTGCACCGTGGCTTTAAGACGGGATCGATACCGACAGTGGGCTACATGGCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATCGcc                                                                                                                   >  1:1325407/1‑150 (MQ=255)             ggAGCATTTGCACCGTGGCTTTAAGACGGGATCGATACCGACAGTGGGCTACATGGCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATCGCCa                                                                                                                  <  1:2181746/149‑1 (MQ=255)             ggAGCATTTGCACCGTGGCTTTAAGACGGGATCGATACCGACAGTGGGCTACATGGCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATCGCCa                                                                                                                  >  2:2181746/1‑149 (MQ=255)              gAGCATTTGCACCGTGGCTTTAAGACGGGATCGATACCGACAGTGGGCTACATGGCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGcccttaatgctgga                                                                                                                >  2:1856878‑M2/1‑136 (MQ=255)              gAGCATTTGCACCGTGGCTTTAAGACGGGATCGATACCGACAGTGGGCTACATGGCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATCGCCAgg                                                                                                                >  2:1699739/1‑150 (MQ=255)               aGCATTTGCACCGTGGCTTTACGACGGGATCGATACCGACAGTGGGCTACATGGCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATCGCCAGGa                                                                                                               >  1:1187666/1‑150 (MQ=255)                  aTTTGCACCGTGGCTTTAAGACGGGATCGATACCGACAGTGGGCTACATGGCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATCGCCAGGAttt                                                                                                            <  2:99767/150‑1 (MQ=255)                    ttGCACCGTGGCTTTAAGACGGGATCGATACCGACAGTGGGCTACATGGCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATCGCCAGGATTTCt                                                                                                          >  1:632331/1‑150 (MQ=255)                       cACCGTGGCTTTAAGACGGGATCGATACCGACAGTGGGCTACATGGCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATCGCCAGGATTTCTATg                                                                                                       <  1:2845485/150‑1 (MQ=255)                        aCCGTGGCTTTAAGACGGGATCGATACCGACAGTGGGCTACATGGCGTGAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATCTTTAAGCGGACGCGATCACCCTTATCGCCAGGATTTCTATgc                                                                                                      <  1:1224025/150‑1 (MQ=255)                          cGTGGCTTTAAGACGGGATCGATACCGACAGTGGGCTACATGGCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATCGCCAGGATTTCTATgcgc                                                                                                    >  2:2431030/1‑150 (MQ=255)                           gTGGCTTTAAGACGGGATCGATACCGACAGTGGGCTACATGGCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATCGCCAGGATTTCTATGCGcc                                                                                                   >  2:2739972/1‑150 (MQ=255)                              gCTTTAAGACGGGATCGATACCGACAGTGGGCTACATGGCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATCGCCAGGATTTCTATGCGCCAAc                                                                                                <  2:1325407/150‑1 (MQ=255)                               cTTTAAGACGGGATCGATACCGACAGTGGGCTACATGGCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATCGCCAGGATTTCTATGCGCCAACg                                                                                               >  1:2038192/1‑150 (MQ=255)                                tttAAGACGGGATCGATACCGACAGTGGGCTACATGGCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATCGCCAGGATTTCTATGCGCCAACGa                                                                                              >  2:2607692/1‑150 (MQ=255)                                tttAAGACGGGATCGATACCGACAGTGGGCTACATGGCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATCGCCAGGATTTCTATGCGCCAACGa                                                                                              >  2:2472828/1‑150 (MQ=255)                                  tAAGACGGGATCGATACCGACAGTGGGCTACATGGCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATCGCCAGGATTTCTATGCGCCAACGAAg                                                                                            <  2:637134/150‑1 (MQ=255)                                     gACGGGATCGATACCGACAGTGGGCTGCATGGCGTAAGCGTCCGTCGAACTCACCTTCCGAACTCCAGAATTGTGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATCGCCAGGATTTCTATGCGCCAACGAAGctc                                                                                         <  1:2212962/150‑1 (MQ=17)                                     gACGGGATCGATACCGACAGTGGGCTACATGGCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCAcc                                                                                                                            <  1:1683326‑M2/115‑3 (MQ=255)                                     gACGGGATCGATACCGACAGTGGGCTACATGGCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCAcc                                                                                                                            >  2:1683326‑M2/1‑113 (MQ=255)                                       cGGGATCGATACCGACAGTGGGCTACATGGCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATCGCCAGGATTTCTATGCGCCAACGAAGCTCtt                                                                                       <  2:1187666/150‑1 (MQ=255)                                        gggATCGATACCGACAGTGGGCTACATGGCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATCGCCAGGATTTCTATGCGCCAACGAAGCTCTTa                                                                                      <  2:2283980/150‑1 (MQ=255)                                          gATCGATACCGACAGTGGGCTACATGGCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATCGCCAGGATTTCTATGCGCCAACGAAGCTCTTATc                                                                                    <  1:2607692/150‑1 (MQ=255)                                          gATCGATACCGACAGTGGGCTACATGGCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATCGCCAGGATTTCTATGCGCCAACGAAGCTCTTATc                                                                                    <  1:2614353/150‑1 (MQ=255)                                               aTACCGACAGTGGGCTACATGGCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATCGCCAGGATTTCTATGCGCCAACGAAGCTCTTATCCGaaa                                                                               <  1:215261/150‑1 (MQ=255)                                                tACCGACAGTCTGCTACATGGCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGAGTATTTTTAAGCGGACGCGATCACCCTTATCGCCAGGATTTCTATGCGCCAACGAAGCTCTTATCCGAAAc                                                                              <  1:185030/150‑1 (MQ=255)                                                    gACAGTGGGCTACATGGCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATCGCCAGGATTTCTATGCGCCAACGAAGCTCTTATCCGAAACCGtt                                                                          <  2:632331/150‑1 (MQ=255)                                                        gTGGGCTACATGGCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATCGCCAGGATTTCTATGCGCCAACGAAGCTCTTATCCGAAACCGTTCaaa                                                                      <  1:1699739/150‑1 (MQ=40)                                                           ggCTACATGGCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATCGCCAGGATTTCTATGCGCCAACGAAGCTCTTATCCGAAACCGTTCAAAGcc                                                                   >  2:1502644/1‑150 (MQ=38)                                                            gCTACATGGCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATCGCCAGGATTTCTATGCGCCAACGAAGCTCTTATcc                                                                                   >  1:35116/1‑133 (MQ=37)                                                            gCTACATGGCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATCGCCAGGATTTCTATGCGCCAACGAAGCTCTTATcc                                                                                   <  2:35116/133‑1 (MQ=37)                                                                 aTGGCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATCGCCAGGATTTCTATGCGCCAACGAAGCTCTTATCCGAAACCGTTCAAAGCCCAGGTc                                                             <  1:1218571/150‑1 (MQ=32)                                                                   ggCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGTGGACGCGATCACCCTTATCGCCAGGATTTCTATGCGCCAACGAAGCTCTTATCCGAAACCGTTCAAAGCCCAGGTCGt                                                           >  2:2398615/1‑150 (MQ=14)                                                                    gCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATCGCCAGGATTTCTATGCGCCAACGAAGCTCTTATCCGAAACCGTTCAAAGCCCAGGTCGtt                                                          <  1:2739972/150‑1 (MQ=11)                                                                                            ttCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCAc                                                                                                                             >  2:2956908‑M2/1‑58 (MQ=255)                                                                                            ttCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCAc                                                                                                                             <  1:2956908‑M2/59‑2 (MQ=255)                                                                                                          aTTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCAcccttaat                                                                                                                      <  1:353495‑M2/52‑9 (MQ=255)                                                                                                          aTTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCAcccttaat                                                                                                                      >  2:353495‑M2/1‑44 (MQ=255)                                                                                                           ttAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCAcccttaatgctggagttcggaaggtgagttcgccggacgcttacgaagcggctggaatcatgctgagag                                                         >  1:1290121‑M2/1‑43 (MQ=255)                                                                                                           ttAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCAcccttaatgctggagttcggaaggtgagttcgccggacgcttacgaagcggctggaatcatgctgagag                                                         <  2:1290121‑M2/112‑70 (MQ=255)                                                                                                             aaGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCAcccttaatgctggagttcggaaggtgagttcgccggac                                                                                        >  2:2353581‑M2/1‑41 (MQ=255)                                                                                                             aaGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCAcccttaatgctggagttcggaaggtgagttcgccggac                                                                                        <  1:2353581‑M2/79‑39 (MQ=255)                                                                                                                        tgtCCGCGTATTTTTAAGCGGACACCATCGcccttaatgctggagttcggaaggtgagttcgccggacgcttccgaagcggctggaatcatgctgagaggttggtgcaacgacccgacaggccattcaccgagcggagtgaacttccaga      <  1:203280‑M2/150‑121 (MQ=255)                                                                                                                            cgcgTATTTTTAAGCGGACACCATCGcccttaatgctggagttcggaaggtgagttcgccggacgcttacgaagcggctggaatcatgctgagaggttggtgcaacgacccgacaggccattcaccgagcggagtgaacttccagatgca  >  2:203280‑M2/1‑26 (MQ=255)                                                                                                                                                     |                                                                                                                             AGCCGCCCTGATGGAGCATTTGCACCGTGGCTTTAAGACGGGATCGATACCGACAGTGGGCTACATGGCGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATCGCCAGGATTTCTATGCGCCAACGAAGCTCTTATCCGAAACCGTTCAAAGCCCAGGTCGTTCAGGAATGCCTGCAACCTGGCGCAACCGTGTCCAGTGTCGCCATCAACCACGGCAT  >  NC_002947/4486271‑4486543

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.