New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4700790 =	116 (1.010)	12 (0.120)	11/216	NT	10.1%	intergenic (‑57/+93)	kdpD/kdpC	sensor protein/potassium‑transporting ATPase subunit C
	?	NC_002947	4700862 =	111 (1.100)					intergenic (‑129/+21)	kdpD/kdpC	sensor protein/potassium‑transporting ATPase subunit C

ATCGGCCCGCCGGTGGTCAACGTGCTGGCGTTGAACCAGGCCTTGGAAAAGCTCGCCATTGTCAGGTAATCGAAGCGCTGGCAGGAAGCCTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4700951‑4700790 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacccgctcctacaGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCTGGTTCAACGCCAGCACGTTGACCACCGGCGGGCCGATCAATGGGTGGAGGGTGGCCTGTTCCAGCAAGGCTTGCAAGCGCTCGACCGGCAGCTGCC  >  NC_002947/4700862‑4701010                                                                                                                                                                                                                                                                                                                         ATCGGCCCGCCGGTGGTCAACGTGCTGGCGTTGAACCAGGCCTTGGAAAAGCTCGCCATTGTCAGGTAATCGAAGCGCTGGCAGGAAGCCTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAA                                                                                                                                                                   <  2:680615/150‑1  TCGGCCCGCCGGTGGTCAACGTGCTGGCGTTGAACCAGGCCTTGGAAAAGCTCGCCATTGTCAGGTAATCGAAGCGCTGGCAGGAAGCCTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAAC                                                                                                                                                                  <  1:681284/150‑1  TCGGCCCGCCGGTGGTCAACGTGCTGGCGTTGAACCAGGCCTTGGAAAAGCTCGCCATTGTCAGGTAATCGAAGCGCTGGCAGGAAGCCTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAAC                                                                                                                                                                  >  1:2632902/1‑150     GCCCGCCGGTGGTCAACGTGCTGGCGTTGAACCAGGCCTTGGAAAAGCTCGCCATTGTCAGGTAATCGAAGCGCTGGCAGGAAGCCTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCG                                                                                                                                                               >  2:709979/1‑150      CCCGCCGGTGGTCAACGTGCTGGCGTTGAACCAGGCCTTGGAAAAGCTCGCCATTGTCAGGTAATCGAAGCGCTGGCAGGAAGCCTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGC                                                                                                                                                              >  1:1433105/1‑150        cggCGGTGGTCACCGCCCTGTGGTTCAACCACGCCTTGGAAAATCTCGCCATTGTCAGGTAATCGAAGCGTTGTCAGGAAGCCTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTC                                                                                                                                                            <  1:532853/147‑1        CGCCGGTGGTCAACGTGCTGGCGTTGAACCAGGCCTTGGAAAAGCTCGCCATTGTCAGGTAATCGAAGCGCTGGCAGGAAGCCTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTC                                                                                                                                                            <  1:2294418/150‑1         GCCGGTGGTCAACGTGCTGGCGTTGAACCAGGCCTTGGAAAAGCTCGCCATTGTCAGGTAATCGAAGCGCTGGCAGGAAGCCTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCC                                                                                                                                                           <  1:1746286/150‑1            GGTGGTCAACGTGCTGGCGTTGAACCAGGCCTTGGAAAAGCTCGCCATTGTCAGGTAATCGAAGCGCTGGCAGGAAGCCTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTAC                                                                                                                                                        <  2:2246281/150‑1                     CGTGCTGGCGTTGAACCAGGCCTTGGAAAAGCTCGCCATTGTCAGGTAATCGAAGCGCTGGCAGGAAGCCTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAAC                                                                                                                                                                  <  2:2378328/131‑1                     CGTGCTGGCGTTGAACCAGGCCTTGGAAAAGCTCGCCATTGTCAGGTAATCGAAGCGCTGGCAGGAAGCCTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAAC                                                                                                                                                                  >  1:2378328/1‑131                                     CAGGCCTTGGAAAAGCTCGCCATTGTCAGGTAATCGAAGCGCTGGCAGGAAGCCTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAAC                                                                                                                                                                  >  2:265196/1‑115                                     CAGGCCTTGGAAAAGCTCGCCATTGTCAGGTAATCGAAGCGCTGGCAGGAAGCCTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAAC                                                                                                                                                                  <  1:265196/115‑1                                          CTTGGAAAAGCTCGCCATTGTCAGGTAATCGAAGCGCTGGCAGGAAGCCTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACC                                                                                                                                                                 <  2:2299971/111‑1                                          CTTGGAAAAGCTCGCCATTGTCAGGTAATCGAAGCGCTGGCAGGAAGCCTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACC                                                                                                                                                                 >  1:2299971/1‑111                                                        CCATTGTCAGGTAATCGAAGCGCTGGCAGGAAGCCTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAAC                                                                                                                                                                  <  1:1640241/96‑1                                                        CCATTGTCAGGTAATCGAAGCGCTGGCAGGAAGCCTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAAC                                                                                                                                                                  >  2:1640241/1‑96                                                          ATTGTCAGGTAATCGAAGCGCTGGCAGGAAGCCTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCT                                                                                                                                                          <  2:1953552/102‑1                                                          ATTGTCAGGTAATCGAAGCGCTGGCAGGAAGCCTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCT                                                                                                                                                          >  1:1953552/1‑102                                                                                          CTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTACAGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCTGGTTCAACGCCAGCACGTTGACCA                                                                          >  1:109183/1‑150                                                                                           TGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTACAGGCTTCCTGCCAGCGCTTCGATTACCTGA                                                                                                                          <  1:246066/101‑1                                                                                           TGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTACAGGCTTCCTGCCAGCGCTTCGATTACCTGA                                                                                                                          >  2:246066/1‑101                                                                                                GAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTACAGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCTGGTTCAAC                                                                                          <  2:2040841/128‑1                                                                                                GAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTACAGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCTGGTTCAAC                                                                                          >  1:2040841/1‑128                                                                                                      GTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTACAGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCTGGTTCAACGCCAGCACGTTGACCACCGGCGGGCCGA                                                              >  1:1413587/1‑150                                                                                                      GTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAAC                                                                                                                                                                  >  1:159456/1‑50                                                                                                      GTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAAC                                                                                                                                                                  <  2:159456/50‑1                                                                                                            CCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTACAGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCTGGTTCAACGCCAGCACGTTGACCACCGGCGGGCCGATCAATG                                                        >  1:288249/1‑150                                                                                                             CGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTACAGGCTTCCTGC                                                                                                                                             <  1:242717/64‑1                                                                                                             CGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTACAGGCTTCCTGC                                                                                                                                             >  2:242717/1‑64                                                                                                                         GGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTACAGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCTGGTTCAACGCCAGCACGTTGACCACCGGCGGGCCGATCAATGGGTGGAGGGTGGC                                           <  2:288249/150‑1                                                                                                                                     tACGTATTCGCGGGTCAACCCGATCCTACAGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCTGGTTCAACGCCAGCACGTTGACCACCGGCGGGCCGATCAATGGGTGGAGGGTGGCCTGTTCCAGCAA                               <  2:1413587/149‑1                                                                                                                                     GACGTATTCGCGGGTAAACCCGCTCCTACAGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCTGGTTCAACGCCAGCACGTTGACCACCGGCGGGCCGATCAATGGGTGGAGGGTGGCCTGTTCCAGCAA                               <  2:109183/150‑1                                                                                                                                                       CCCGCTCCTACAGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCTGGTTCAACGCCAGCACGTTGACCACCGGCGGGCCGATCAATGGGTGGAGGGTGGCCTGTTCCAGCAAGGCTTGCCAGCGCTCGAC             >  2:581525/1‑150                                                                                                                                                       CCCGCTCCTACAGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCTGGTTCAACGCCAGCACGTTGACCACCGGCGGGCCGATCAATGGGTGGAGGGTG                                             >  2:1005056/1‑118                                                                                                                                                       CCCGCTCCTACAGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCTGGTTCAACGCCAGCACGTTGACCACCGGCGGGCCGATCAATGGGTGGAGGGTG                                             <  1:1005056/118‑1                                                                                                                                                        CCGCTCCTACAGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCTGGTTCAACGCCAGCACGTTGACCACCGGCGGGCCGATCAATGGGTGGAGGGTGGCCTGTTCCAGCAAGGCTTGCAA                      >  2:2733216/1‑140                                                                                                                                                        CCGCTCCTACAGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCTGGTTCAACGCCAGCACGTTGACCACCGGCGGGCCGATCAATGGGTGGAGGGTGGCCTGTTCCAGCAAGGCTTGCAA                      <  1:2733216/140‑1                                                                                                                                                          GCTCCTACAGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCTGGTTCAACGCCAGCACGTTGACCACCGGCGGGCCGATCAATGGGTGGAGGGTGGCCTGTTCCAGCAAGGCTTGCAAGCGCTCGACCGG          >  2:1486503/1‑150                                                                                                                                                               TACAGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCTGGTTCAACGCCAGCACGTTGACCACCGGCGGGCCGATCAATGGGTGGAGGGTGGCCTGTTCCAGCAAGGCTTGCAAGCGCTCGACCGGCAGCT     >  1:681742/1‑150                                                                                                                                                               TACAGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCTGGTTCAACGCCAGCACGTTGACCACCGGCGGGCCGATCAATGGGTGGAGGGTGGCCTGTTCCAGCAAGGCTTGC                        <  2:1148784/131‑1                                                                                                                                                               TACAGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCTGGTTCAACGCCAGCACGTTGACCACCGGCGGGCCGATCAATGGGTGGAGGGTGGCCTGTTCCAGCAAGGCTTGC                        >  1:1148784/1‑131                                                                                                                                                                ACAGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCTGGTTCAACGCCAGCACGTTGACCACCGGCGGGCCGATCAATGGGTGGAGGGTGGCCTGTTCCAGCAAGGCTTGCAAGCGCTCGACCGGCAGCTG    >  1:2551209/1‑150                                                                                                                                                                  AGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCTGGTTCAACGCCAGCACGTTGACCACCGGCGGGCCGATCAATGGGTGGAGGGTGGCCTGTTCCAGCAAGGCTTGCAAGCGCTCGACCGGCAGCTGCC  <  2:483059/150‑1                                                                                                                                                                  AGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCTGGTTCAACGCCAGCACGTTGACCACCGGCGGGCCGATCAATGGGTGGAGGGTGGCCTGTTCCAGCAAGGCTTGCAAGCGCTCGACCGGCAGCTGCC  >  1:2031758/1‑150                                                                                                                                                                  AGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCTGGTTCAACGCCAGCACGTTGACCACCGGCGGGCCGATCAATGGGTGGAGGGTGGC                                           <  2:1443669/109‑1                                                                                                                                                                  AGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCTGGTTCAACGCCAGCACGTTGACCACCGGCGGGCCGATCAATGGGTGGAGGGTGGC                                           >  1:1443669/1‑109                                                                                                                                                                                                                                                                                                                         ATCGGCCCGCCGGTGGTCAACGTGCTGGCGTTGAACCAGGCCTTGGAAAAGCTCGCCATTGTCAGGTAATCGAAGCGCTGGCAGGAAGCCTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4700951‑4700790 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacccgctcctacaGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCTGGTTCAACGCCAGCACGTTGACCACCGGCGGGCCGATCAATGGGTGGAGGGTGGCCTGTTCCAGCAAGGCTTGCAAGCGCTCGACCGGCAGCTGCC  >  NC_002947/4700862‑4701010

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.