| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5007888 = | 75 (0.660) | 7 (0.060) | 7/230 | NT | 8.7% | intergenic (+222/‑677) | PP_5674/PP_4411 | hypothetical protein/hypothetical protein |
| ? | NC_002947 | 5007917 = | 76 (0.700) | intergenic (+251/‑648) | PP_5674/PP_4411 | hypothetical protein/hypothetical protein | |||||
CCAGATACCCGATGCTGACCAGGTAATGAAGCTTGTCCCGGTGATTTCGCATTCAGCCGGCACTCACTTGGTACGCGACATAGATATCCCGCAGCCATGGCGGGATCACTTCCTATGCGCAAGCCGAGGCGCCACACGCCTAACGGAAGGCGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5008042‑5007888‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcctCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCTTCATTACCTGGTCAGCATCGGGTATCTGGCCACCTTGGTAGGTGGCTAGATC > NC_002947/5007917‑5008065 CCAGATACCCGATGCTGACCAGGTAATGAAGCTTGTCCCGGTGATTTCGCATTCAGCCGGCACTCACTTGGTACGCGACATAGATATCCCGCAGCCATGGCGGGATCACTTCCTATGCGCAAGCCGAGGCGCCACACGCCTAACGGAAGG > 2:2351466/1‑150CCAGATACCCGATGCTGACCAGGTAATGAAGCTTGTCCCGGTGATTTCGCATTCAGCCGGCACTCACTTGGTACGCGACATAGATATCCCGCAGCCATGGCGGGATCACTTCCTATGCGCAAGCCGAGGCGCCACACGCCTAACGGAAGG > 1:283695/1‑150 GATACCCGATGCTGACCAGGTAATGAAGCTTGTCCCGGTGATTTCGCATTCAGCCGGCACTCACTTGGTACGCGACATAGATATCCCGCAGCCATGGCGGGATCACTTCCTATGCGCAAGCCGAGGCGCCACACGCCTAACGGAAGGCGC < 2:2148758/150‑1 GATACCCGATGCTGACCAGGTAATGAAGCTTGTCCCGGTGATTTCGCATTCAGCCGGCACTCACTTGGTACGCGACATAGATATCCCGCAGCCATGGCGGGATCACTTCCTATGCGCAAGCCGAGGCGCCACACGCCTAACGGAAGGC < 2:983972/148‑1 GATACCCGATGCTGACCAGGTAATGAAGCTTGTCCCGGTGATTTCGCATTCAGCCGGCACTCACTTGGTACGCGACATAGATATCCCGCAGCCATGGCGGGATCACTTCCTATGCGCAAGCCGAGGCGCCACACGCCTAACGGAAGGC > 1:983972/1‑148 ATACCCGATGCTGACCAGGGAATGAAGCTTGTCCCGGTGATTTCGCATTCAGCCGGCACTCACTTGGTACGCGACATAGATACCCCGCAGCCATGGCGGGATCACTTCCTATGCGCAAGCCGAGGCGCCACACGCCTAACGGAAGGCGCC < 2:837457/150‑1 GCAAGCCGAGGCGCCACACGCCTAACGGAAGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGC < 1:2357339/108‑1 GCAAGCCGAGGCGCCACACGCCTAACGGAAGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGC > 2:2357339/1‑108 CGAGGCGCCACACGCCTAACGGAAGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCTTCATTACCTGGTCAGCATCGG < 2:833121/149‑1 CGAGGCGCCACACGCCTAACGGAAGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCTTCATTACCTGGTCAGCATCGG > 1:833121/1‑149 GAGGCGCCACACGCCTAACGGAAGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCTTCATTACCTGGTCAGCATCGGGT > 1:1128751/1‑150 AGGCGCCACACGCCTAACGGAAGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGA > 1:10715/1‑109 AGGCGCCACACGCCTAACGGAAGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGA < 2:10715/109‑1 GGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCTTCATTACCTGGTCAGCATCGGGTATCTGGCCACCTTGGTAGGTGGC < 1:2783470/150‑1 GCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCTTCATTACCTGGTCAGCATCGGGTATCTGGCCACCTTGGTAGGTGGCT > 1:914429/1‑150 GCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCTTCATTACCTGGTCAGCATCGGGTATCTGGCCACCTTGGTAGGTGGCT < 1:244790/150‑1 GCNTCGGCTTGCGCATAGGAAGTGATCNCGCCATGGCTGCNGGATCTNTNTGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCTTCATTACCTGGTCAGCATCGGGTATCTGGCCACCTTGGTAGGTGGCTAG > 1:1729682/1‑150 CCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGG > 2:1953876/1‑92 CCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGG < 1:1953876/92‑1 CTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCTTCATTACCTGGTCAGCATCGGGTATCTGGCCACCTTGGTAGGTGGCTAGAT > 1:1068500/1‑150 CTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAAT > 1:2486137/1‑85 CTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAAT < 2:2486137/85‑1 TCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCTTCATTACCTGGTCAGCATCGGGTATCTGGCCACCTTGGTAGGTGGCTAGATC > 2:798407/1‑150 CCAGATACCCGATGCTGACCAGGTAATGAAGCTTGTCCCGGTGATTTCGCATTCAGCCGGCACTCACTTGGTACGCGACATAGATATCCCGCAGCCATGGCGGGATCACTTCCTATGCGCAAGCCGAGGCGCCACACGCCTAACGGAAGGCGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5008042‑5007888‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcctCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCTTCATTACCTGGTCAGCATCGGGTATCTGGCCACCTTGGTAGGTGGCTAGATC > NC_002947/5007917‑5008065 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |