New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 5007888 =75 (0.660)7 (0.060) 7/230 NT 8.7% intergenic (+222/‑677) PP_5674/PP_4411 hypothetical protein/hypothetical protein
?NC_002947 5007917 = 76 (0.700)intergenic (+251/‑648) PP_5674/PP_4411 hypothetical protein/hypothetical protein

TGAAAATTGCTGGAGCAAATATCTCTAATGCACCTCCATTTTCACGCTGCTTGTGCAAGCCAACTTTGCCCGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCTTCATTACCTGGTCAGCATCGG  >  NC_002947/5007740‑5008034
                                                                                                                                                     |                                                                                                                                                  
gatctagccacctaccaaggtggccagatacccgatgctgaccaggtaatgaagcttgtcccggtgatttcgcattcagccggcactcacttggtacgcgacatagatatcccgcagccatggcgggatcacttcctatgcgcaagccga                                                                                                                                                    >  2:798407‑M1/150‑150 (MQ=255)
 gAAAATTGCTGGAGCAAATATCTCTAATGCACCTCCATTTTCACGCTGCTTGTGCAAGCCAACTTTGCCCGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAgg                                                                                                                                                  <  2:1478188/150‑1 (MQ=255)
 gAAAATTGCTGGAGCAAATATCTCTAATGCACCTCCATTTTCACGCTGCTTGTGCAAGCCAACTTTGCCCGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAgg                                                                                                                                                  >  1:1478188/1‑150 (MQ=255)
 atctagccacctaccaaggtggccagatacccgatgctgaccaggtaatgaagcttgtcccggtgatttcgcattcagccggcactcacttggtacgcgacatagatatcccgcagccatggcgggatcacttcctatgcgcaagccgAg                                                                                                                                                   >  1:1068500‑M1/149‑150 (MQ=255)
   ctagccacctaccaaggtggccagatacccgatgctgaccaggtaatgaagcttgtcccggtgatttcgcattcagccggcactcacttggtacgcgacananagatccngcagccatggcgngatcacttcctatgcgcaagccgANgc                                                                                                                                                 >  1:1729682‑M1/147‑150 (MQ=255)
     agccacctaccaaggtggccagatacccgatgctgaccaggtaatgaagcttgtcccggtgatttcgcattcagccggcactcacttggtacgcgacatagatatcccgcagccatggcgggatcacttcctatgcgcaagccgAGgcgc                                                                                                                                               >  1:914429‑M1/145‑150 (MQ=255)
     agccacctaccaaggtggccagatacccgatgctgaccaggtaatgaagcttgtcccggtgatttcgcattcagccggcactcacttggtacgcgacatagatatcccgcagccatggcgggatcacttcctatgcgcaagccgAGgcgc                                                                                                                                               <  1:244790‑M1/6‑1 (MQ=255)
      gccacctaccaaggtggccagatacccgatgctgaccaggtaatgaagcttgtcccggtgatttcgcattcagccggcactcacttggtacgcgacatagatatcccgcagccatggcgggatcacttcctatgcgcaagccgAGGCGcc                                                                                                                                              <  1:2783470‑M1/7‑1 (MQ=255)
         cTGGAGCAAATATCTCTAATGCACCTCCATTTTCACGCTGCTTGTGCAAGCCAACTTTGCCCGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTcc                                                                                                                                          >  1:2245388/1‑150 (MQ=255)
          tGGAGCAAATATCTCTAATGCACCTCCATTTTCACGCTGCTTGTGCAAGCCAACTTTGCCCGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCg                                                                                                                                         >  2:985875/1‑150 (MQ=255)
            gAGCAAATATCTCTAATGCACCTCCATTTTCACGCTGCTTGTGCAAGCCAACTTTGCCCGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGtt                                                                                                                                       >  1:16468/1‑150 (MQ=255)
              gCAAATATCTCTAATGCACCTCCATTTTCACGCTGCTTGTGCAAGCCAACTTTGCCCGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGtt                                                                                                                                       <  1:67398/148‑1 (MQ=255)
              gCAAATATCTCTAATGCACCTCCATTTTCACGCTGCTTGTGCAAGCCAACTTTGCCCGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGtt                                                                                                                                       >  2:67398/1‑148 (MQ=255)
              gCAAATATCTCTAATGCACCTCCATTTTCACGCTGCTTGTGCAAGCCAACTTTGCCCGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAg                                                                                                                                     <  1:1349941/150‑1 (MQ=255)
               cAAATATCTCTAATGCACCTCCATTTTCACGCTGCTTGTGCAAGCTAACTTTGCCCGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAgg                                                                                                                                    >  2:2112321/1‑150 (MQ=255)
                    atCTCTAATGCACCTCCATTTTCACGCTGCTTGTGCAAGCTAACTTTGCCCGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCgtgt                                                                                                                               <  1:2112321/150‑1 (MQ=255)
                     tctcTAATGCACCTCCATTTTCACGCTGCTTGTGCAAGCCAACTTTGCCCGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGtgtg                                                                                                                              >  1:2296793/1‑150 (MQ=255)
                           aTGCACCTCCATTTTCACGCTGCTTGTGCAAGCCAACTTTGCCCGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCt                                                                                                                        <  2:411428/150‑1 (MQ=255)
                             gCACCTCCATTTTCACGCTGCTTGTGCAAGCCAACTTTGCCCGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCg                                                                                                                      >  1:1418672/1‑150 (MQ=255)
                             acccgatgctgaccaggtaatgaagcttgtcccggtgatttcgcattcagccggcactcacttggtacgcgacatagatatcccgcagccatggcgggatcacttcctatgcgcaagccgAGGCGCCTTCCGTTAGGCGTGTGGCGCCTc                                                                                                                       >  1:1128751‑M1/121‑150 (MQ=255)
                               ccgatgctgaccaggtaatgaagcttgtcccggtgatttcgcattcagccggcactcacttggtacgcgacatagatatcccgcagccatggcgggatcacttcctatgcgcaagccgAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCg                                                                                                                      <  2:833121‑M1/31‑1 (MQ=255)
                               ccgatgctgaccaggtaatgaagcttgtcccggtgatttcgcattcagccggcactcacttggtacgcgacatagatatcccgcagccatggcgggatcacttcctatgcgcaagccgAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCg                                                                                                                      >  1:833121‑M1/119‑149 (MQ=255)
                                 cTCCATTTTCACGCTGCTTGTGCAAGCCAACTTTGCCCGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCtt                                                                                                                  >  1:1109234/1‑150 (MQ=255)
                                 cTCCATTTTCACGCTGCTTGTGCAAGCCAACTTTGCCCAGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCtt                                                                                                                  <  1:1304603/150‑1 (MQ=255)
                                   cccttttCCCGCTGCTTGTGGCCGGTGATTTGGCGCGTCAGACGCGCTGTTAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTgc                                                                                                                <  2:1109234/147‑1 (MQ=255)
                                           aCGCTGCTTGTGCAAGCCAACTTTGCCCGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGa                                                                                                        >  1:552100/1‑150 (MQ=255)
                                           aCGCTGCTTGTGCAAGCCAACTTTGCCCGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGa                                                                                                        <  2:510894/150‑1 (MQ=255)
                                                    gtgCAAGCCAACTTTGCCCGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATccc                                                                                               <  2:2633045/150‑1 (MQ=255)
                                                          gCCAACTTTGCCCGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCAGCCTTCCATTCCCTTATGAATTTCTTCCAGTGGTGAACATATACGCCATCCGTTAAGCGTGTGGCGCATCGGCTTGCGCATACGAAGTGATTCCGCAATg                                                                                         >  2:753712/1‑150 (MQ=255)
                                                           ccAACTTTGCCCGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATgg                                                                                        >  1:641394/1‑150 (MQ=255)
                                                            ccggtgatttcgcattcagccggcactcacttggtacgcgacatagatatcccgcagccatggcgggatcacttcctatgcgcaagccgAgg                                                                                                                                                  >  2:1953876‑M1/90‑92 (MQ=255)
                                                            ccggtgatttcgcattcagccggcactcacttggtacgcgacatagatatcccgcagccatggcgggatcacttcctatgcgcaagccgAgg                                                                                                                                                  <  1:1953876‑M1/3‑1 (MQ=255)
                                                               cTTTGCCCGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGc                                                                                    <  2:1418672/150‑1 (MQ=255)
                                                               cTTTGCCCGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGc                                                                                    <  1:1501475/150‑1 (MQ=255)
                                                                 ttGCCCGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCgg                                                                                  <  1:952676/150‑1 (MQ=255)
                                                                 ttGCCCGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCgg                                                                                  <  1:2989554/150‑1 (MQ=255)
                                                                  atttcgcattcagccggcactcacttggtacgcgacatagatatcccgcagccatggcgggatcacttcctatgcgcaagccgAg                                                                                                                                                   <  2:2486137‑M1/2‑1 (MQ=255)
                                                                  atttcgcattcagccggcactcacttggtacgcgacatagatatcccgcagccatggcgggatcacttcctatgcgcaagccgAg                                                                                                                                                   >  1:2486137‑M1/84‑85 (MQ=255)
                                                                   gCCCGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGa                                                                                >  1:2446293/1‑150 (MQ=255)
                                                                     tcgcattcagccggcactcacttggtacgcgacatagatatcccgcagccatggcgggatcacttcctatgcgcaagccgAGGCGCCTTCCGTTAGGCGTGTGGCGCCt                                                                                                                        >  1:10715‑M1/81‑109 (MQ=255)
                                                                     tcgcattcagccggcactcacttggtacgcgacatagatatcccgcagccatggcgggatcacttcctatgcgcaagccgAGGCGCCTTCCGTTAGGCGTGTGGCGCCt                                                                                                                        <  2:10715‑M1/29‑1 (MQ=255)
                                                                     ccGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCTTGGCTGCGGGata                                                                              >  2:283695/1‑150 (MQ=255)
                                                                     ccGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGata                                                                              >  2:2593866/1‑150 (MQ=255)
                                                                      cGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGatat                                                                             >  2:340214/1‑150 (MQ=255)
                                                                          aTACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTAt                                                                         >  1:1701124/1‑150 (MQ=255)
                                                                          aTACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTAt                                                                         >  2:1837887/1‑150 (MQ=255)
                                                                          aTACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTAt                                                                         >  1:1854891/1‑150 (MQ=255)
                                                                          aTACGCTCTGTGAGCCTTAAGGTGCTTAATTTAAGCTATCGCAAGCGGTGTGAATTTCTTCCAGTCGTGAAGATGGTGGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTAt                                                                         <  1:2214781/150‑1 (MQ=255)
                                                                            aCGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGt                                                                       <  2:2985608/150‑1 (MQ=255)
                                                                            aCGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGt                                                                       >  1:2822429/1‑150 (MQ=255)
                                                                              gccggcactcacttggtacgcgacatagatatcccgcagccatggcgggatcacttcctatgcgcaagccgAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTgc                                                                                                                >  2:2357339‑M1/72‑108 (MQ=255)
                                                                              gccggcactcacttggtacgcgacatagatatcccgcagccatggcgggatcacttcctatgcgcaagccgAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTgc                                                                                                                <  1:2357339‑M1/37‑1 (MQ=255)
                                                                                      aGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCaa                                                             <  1:35738/150‑1 (MQ=255)
                                                                                       gCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATGGGCGCGTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAag                                                            <  2:871872/150‑1 (MQ=255)
                                                                                             aGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAagtgagtg                                                      >  2:1735763/1‑150 (MQ=255)
                                                                                              ggTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGc                                                     >  1:1639408/1‑150 (MQ=255)
                                                                                                tGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCg                                                   >  2:1066237/1‑150 (MQ=255)
                                                                                                     aaTTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGaa                                             >  2:1815346/1‑150 (MQ=255)
                                                                                                       tttCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGAt                                                                                                  >  2:2423519/1‑96 (MQ=255)
                                                                                                       tttCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGAt                                                                                                  <  1:2423519/96‑1 (MQ=255)
                                                                                                       tttCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAAt                                            <  1:1510544/150‑1 (MQ=255)
                                                                                                       tttCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAAt                                            <  1:985875/150‑1 (MQ=255)
                                                                                                           ggCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGaa                                       <  1:1815346/150‑1 (MQ=255)
                                                                                                             cTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGaaa                                      >  2:1605810/1‑150 (MQ=255)
                                                                                                              tttCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGGTCCCGCCATGGCTGCGGGCTATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAAt                                     >  2:716679/1‑150 (MQ=255)
                                                                                                              tttCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCACGTACCAAGTGAGTGCCGGCTGAATGCGAAAt                                     >  2:244790/1‑150 (MQ=255)
                                                                                                              tttCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGGGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGGAAt                                     >  1:598820/1‑150 (MQ=255)
                                                                                                                   cATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCAcc                                 <  2:552100/150‑1 (MQ=255)
                                                                                                                    aTTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCCTAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCg                                >  1:2224544/1‑150 (MQ=255)
                                                                                                                    aTTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCAcc                                 <  2:655581/149‑1 (MQ=255)
                                                                                                                    aTTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCAcc                                 >  1:655581/1‑149 (MQ=255)
                                                                                                                    aTTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCg                                >  2:2363838/1‑150 (MQ=255)
                                                                                                                      tCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCgg                                                                                  <  2:2545304/98‑1 (MQ=255)
                                                                                                                      tCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCgg                                                                                  >  1:2545304/1‑98 (MQ=255)
                                                                                                                      tCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGACATGTGGCGCCGCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCggg                              <  1:2217572/150‑1 (MQ=255)
                                                                                                                            aTGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAagtga                                                         <  2:1293038/117‑1 (MQ=255)
                                                                                                                            aTGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAagtga                                                         >  1:1293038/1‑117 (MQ=255)
                                                                                                                            aTGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGc                        >  2:255607/1‑150 (MQ=255)
                                                                                                                              gAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCtt                      >  1:1863052/1‑150 (MQ=255)
                                                                                                                              gAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCtt                      >  1:2728226/1‑150 (MQ=255)
                                                                                                                              gAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCtt                      >  2:3053206/1‑150 (MQ=255)
                                                                                                                               aaTTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCTTc                     >  1:526480/1‑150 (MQ=255)
                                                                                                                                 tttCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGAGAAATCCCCGGGAAAAGATTCaa                   >  2:173991/1‑149 (MQ=255)
                                                                                                                                       ccAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCTTCATTACCTg             >  1:2351466/1‑150 (MQ=255)
                                                                                                                                        cAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCTTCATTACCTgg            <  2:2296793/150‑1 (MQ=255)
                                                                                                                                        cAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCTTCATTACCTgg            <  2:2822429/150‑1 (MQ=255)
                                                                                                                                        cAGTCGTGAAGATAGGCGCCTTCCGTTAGGCATGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCgg                               <  2:642281/131‑1 (MQ=255)
                                                                                                                                        cAGTCGTGAAGATAGGCGCCTTCCGTTAGGCATGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCgg                               >  1:642281/1‑131 (MQ=255)
                                                                                                                                            cGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCTTCATTACCTGGTCAg        <  2:1863052/150‑1 (MQ=255)
                                                                                                                                             gTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGata                                                                              <  2:572500/79‑1 (MQ=255)
                                                                                                                                             gTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGata                                                                              >  1:572500/1‑79 (MQ=255)
                                                                                                                                              tGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATACCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCTTCATTACCGGCTCAGCa      >  2:105379/1‑150 (MQ=255)
                                                                                                                                               gAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGat                                                                               >  2:2343947/1‑76 (MQ=255)
                                                                                                                                               gAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGat                                                                               <  1:2343947/76‑1 (MQ=255)
                                                                                                                                                aaGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCTTCATTACCTGGTCAGCATc    <  2:1854891/150‑1 (MQ=255)
                                                                                                                                                 aGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCTTCATTACCTGGTCAGCATCg   <  2:2728226/150‑1 (MQ=255)
                                                                                                                                                 aGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCTTCATTACCTGGTCAGCATCg   <  1:1735763/150‑1 (MQ=255)
                                                                                                                                                  gATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTCTGTCGCGTACCAAGTGAGTGGCGTCTCAATGCTAAATCACCGGGACAAGCTTCATTACCTGGTCAGCATCgg  <  1:2363838/150‑1 (MQ=255)
                                                                                                                                                  gATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCTTCATTACCTGGTCAGCATCgg  <  2:16468/150‑1 (MQ=255)
                                                                                                                                                  gATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCTTCATTACCTGGTCAGCATCgg  <  1:753712/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                  
TGAAAATTGCTGGAGCAAATATCTCTAATGCACCTCCATTTTCACGCTGCTTGTGCAAGCCAACTTTGCCCGGCATACGCTCTGTGAGCCTTAAGGTGCTTAATTTCGGCTTTCCATTCGCTTATGAATTTCTTCCAGTCGTGAAGATAGGCGCCTTCCGTTAGGCGTGTGGCGCCTCGGCTTGCGCATAGGAAGTGATCCCGCCATGGCTGCGGGATATCTATGTCGCGTACCAAGTGAGTGCCGGCTGAATGCGAAATCACCGGGACAAGCTTCATTACCTGGTCAGCATCGG  >  NC_002947/5007740‑5008034

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.