New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 533676495 (0.830)5 (0.040) 4/240 NT 5.1% coding (166/1443 nt) PP_4696 nitrogen regulation protein NR(I)
?NC_002947 = 5336783 91 (0.810)coding (185/1443 nt) PP_4696 nitrogen regulation protein NR(I)

CGCTCGGCCCTGCGTCGCCTGCTTGAGCGGAACCAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5336638‑5336764
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcTCGGTGCCGGGCGCGCCGGGCAGGCGCAGGTCGCTGACGATGAGGTCGAAAGTGGCAATGCTGAAGCGTTCCTGGGCTTCCTGCACCGAGCCGGCCTCGCTGACCTGGTACTGGTTCCGCTCAAGCAGGCGACGCAGGGCCGAGCGGA  <  NC_002947/5336783‑5336636
                                                                                                                                                                                                                                                                                   
CGCTCGGCCCTGCGTCGCCTGCTTGAGCGGAACCAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCTCGGTGCCGGGCGCGCCGGGCAG                                                                                                                               <  1:2478820/150‑1
                                                            GTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCTCGGTGCCGGGCGCGCCGGGCAGG                                                                                                                              >  1:2881989/1‑91
                                                            GTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCTCGGTGCCGGGCGCGCCGGGCAGG                                                                                                                              <  2:2881989/91‑1
                                                                                 TTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCTCGGTGCCGGGCGCGCCGGGCAG                                                                                                                               <  1:2288120/69‑1
                                                                                 TTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCTCGGTGCCGGGCGCGCCGGGCAG                                                                                                                               >  2:2288120/1‑69
                                                                                                                             GCTCGGTGCCGGGCGCGCCGGGCAGGCGCAGGTCGCTGACGATGAGGTCGAAAGTGGCAATGCTGAAGCGTTCCTGGGCTTCCTGCACCGAGCCGGCCTCGCTGACCTGGTACTGGTTCCGCTCAAGCAGGCGACGCAGGGCCGAGCGGA  >  1:792898/1‑150
                                                                                                                             GCTCGGTGCCGGGCGCGCCGGGCAGGCGCAGGTCGCTGACGATGAGGTCGAAAGTGGCAATGCTGAAGCGTTCCTGGGCTTCCTGCACCGAGCCGGCCTCGCTGACCTGGTACTGGTTCCGCTCAAGCAGGCGACGCAGGGCCGAGCGGA  >  2:605818/1‑150
                                                                                                                                                                                                                                                                                   
CGCTCGGCCCTGCGTCGCCTGCTTGAGCGGAACCAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5336638‑5336764
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcTCGGTGCCGGGCGCGCCGGGCAGGCGCAGGTCGCTGACGATGAGGTCGAAAGTGGCAATGCTGAAGCGTTCCTGGGCTTCCTGCACCGAGCCGGCCTCGCTGACCTGGTACTGGTTCCGCTCAAGCAGGCGACGCAGGGCCGAGCGGA  <  NC_002947/5336783‑5336636

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.