| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5827863 = | 108 (0.940) | 7 (0.060) | 7/232 | NT | 5.5% | intergenic (+9/+190) | mtgA/rpoH | monofunctional biosynthetic peptidoglycan transglycosylase/RNA polymerase factor sigma‑32 |
| ? | NC_002947 | 5827987 = | 140 (1.290) | intergenic (+133/+66) | mtgA/rpoH | monofunctional biosynthetic peptidoglycan transglycosylase/RNA polymerase factor sigma‑32 | |||||
ATGGGGTGAGCGGCTTTTTTGTTTGGCTTTGCCGGCCTCTTCGCGGGTAAGCCCGCTCCTACAGGGGATGCGGTTGCCTGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5828017‑5827863‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccggCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCATCGCATTCTTCTCCAACTGGCGAATACGCTCAGCCGATACGCTGTACTT > NC_002947/5827987‑5828133 ATGGGGTGAGCGGCTTTTTTGTTTGGCTTTGCCGGCCTCTTCGCGGGTAAGCCCGCTCCTACAGGGGATGCGGTTGCCTGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGGTTTACCCGCGAAAGG < 1:2789111/150‑1ATGGGGTGAGCGGCTTTTTTGTTTGGCTTTGCCGGCCTCTTCGCGGGTAAGCCCGCTCCTACAGGGGATGCGGTTGCCTGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGGTTTACCCGCGAAAGG < 1:501242/150‑1ATGGGGTGAGCGGCTTTTTTGTTTGGCTTTGCCGGCCTCTTCGCGGGTAAGCCCGCTCCTACAGGGGATGCGGTTGCCTGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGGTTTACCCGCGAAAGG < 2:1830870/150‑1ATGGGGTGAGCGGCTTTTTTGTTTGGCTTTGCCGGCCTCTTCGCGGGTAAGCCCGCTCCTACAGGGGATGCGGTTGACTGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGGTTTACCCGCGAAAGG < 2:651564/150‑1 GGGGTGAGCGGCTTTTTTGTTTGGCTTTGCCGGCCTCTTCGCGGGTAAGCCCGCTCCTACAGGGGATGCGGTTGCCTGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGC < 2:2871615/150‑1 GGGTGAGCGGCTTTTTTGTTTGGCTTTGCCGGCCTCTTCGCGGGTAAGCCCGCTCCTACAGGGGATGCGGTTGCCTGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCC < 2:962138/150‑1 GGGTGAGCGGCTTTTTTGTTTGGCTTTGCCGGCCTCTTCGCGGGTAAGCCCGCTCCTACAGGGGATGCGGTTGCCTGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCC < 1:2313506/150‑1 GGTGAGCGGCTTTTTTGTTTGGCTTTGCCGGCCTCTTCGCGGGTAAGCCCGCTCCTACAGGGGATGCGGTTGCCTGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCG > 2:3015904/1‑150 GTGAGCGGCTTTTTTGTTTGGCTTTGCCGGCCTCTTCGCGGGTAAGCCCGCTCCTACAGGGGATGCGGTTGCCTGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGG < 2:1235781/150‑1 GTGAGCGGCTTTTTTGTTTGGCTTTGCCGGCCTCTTCGCGGGTAAGCCCGCTCCTACAGGGGATGCGGTTGCCTGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGG > 2:1388798/1‑150 GTGAGCGGCTTTTTTGTTTGGCTTTGCCGGCCTCGTCGCGGGTAAGCCCGCTCCTACAGGGGATGCGGTTGCCTGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGG < 2:2335016/150‑1 TTTGCCGGCCTCTTCGCGGGTAAGCCCGCTCCTACAGGGGATGCGGTTGCCTGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCAAAGCCAAACAAAAAAGCCGC > 1:2872454/1‑150 CGGCCTCTTCGAGGGTAAGCCCGCTCCTACAGGGGATGCGGTTGCCTGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCA > 2:1808009/1‑148 CGGCCTCTTCGAGGGTAAGCCCGCTCCTACAGGGGATGCGGTTGCCTGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCA < 1:1808009/148‑1 GTAAGCCCGCTCCTACAGGGGATGCGGTTGCCTGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCG > 2:2664133/1‑150 CCCGCTCCTACAGGGGATGCGGTTGCCTGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGC < 2:2775265/144‑1 CCCGCTCCTACAGGGGATGCGGTTGCCTGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGC > 1:2775265/1‑144 TACAGGGGATGCGGTTGCCTGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCG > 2:2767394/1‑95 TACAGGGGATGCGGTTGCCTGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCG < 1:2767394/95‑1 CGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGGTTTACCCGCGAAAGG < 1:1244012/54‑1 CGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGGTTTACCCGCGAAAGG > 2:1244012/1‑54 GAGCGGGTTTACCCGCGAAAGGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCCTAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCATCGCATTCTTCTCCAACTGGCGAAT < 2:2872454/150‑1 GGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCATCGCATTCTTCTCCAACTGGCGAATACGCTCAGCCGATACGCTGTA < 2:2541513/150‑1 CGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCATCGCATTCTTCTACAACTGGCGAATACGCTCAGCCGATACGCTGTACTT > 2:1432999/1‑150 ATGGGGTGAGCGGCTTTTTTGTTTGGCTTTGCCGGCCTCTTCGCGGGTAAGCCCGCTCCTACAGGGGATGCGGTTGCCTGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5828017‑5827863‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccggCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCATCGCATTCTTCTCCAACTGGCGAATACGCTCAGCCGATACGCTGTACTT > NC_002947/5827987‑5828133 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |