| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5827881 | 127 (1.110) | 9 (0.090) | 8/222 | NT | 6.9% | intergenic (+27/+172) | mtgA/rpoH | monofunctional biosynthetic peptidoglycan transglycosylase/RNA polymerase factor sigma‑32 |
| ? | NC_002947 | = 5827967 | 128 (1.230) | intergenic (+113/+86) | mtgA/rpoH | monofunctional biosynthetic peptidoglycan transglycosylase/RNA polymerase factor sigma‑32 | |||||
AGCCCAATCAAGTGGAGTGCCAGCCGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCTTTCGCGGGTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5827723‑5827881‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggtaaGCCCGCTCCTACAGGGGATGCGGTTGCCTGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCATTCAAAGCTTTCTGGAGGAGTCCAGCTGCATCAG < NC_002947/5827967‑5827822 AGCCCAATCAAGTGGAGTGCCAGCCGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCTTT < 2:569330/150‑1 CCCAATCAAGTGGAGTGCCAGCCGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCTTTCG > 2:451772/1‑150 CCAATCAAGTGGAGTGCCAGCCGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCTTTCGC < 1:2182825/150‑1 AATCAAGTGGAGTGCCAGCCGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCTTTCGCGG > 2:2218385/1‑150 AATCAAGTGGAGTGCCAGCCGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCTTTCGCGG < 1:2098746/150‑1 AATCAAGTGGAGTGCCAGCCGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCTTTCGCGG < 2:403641/150‑1 ATCAAGTGGAGTGCCAGCCGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCTTTCGCGGG < 2:1958805/150‑1 TCAAGTGGAGTGCCAGCCGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCTTTCGCGGGT > 1:1369320/1‑150 AAGTGGAGTGCCAGCCGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCTTTCGCGGGTAA > 1:2658753/1‑150 CCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGTTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCTTTCGCGG > 1:563206/1‑121 CCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGTTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCTTTCGCGG < 2:563206/121‑1 TACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCTTTCGCGG < 2:1961312/119‑1 TACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCTTTCGCGG > 1:1961312/1‑119 CCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCTTTCGCGGGTAAGCCCGCTCCTACAGGGGATGCGGTTGCCTGTAGG > 2:1924177/1‑150 CCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCCTTCGCGGGTAAGCCCGCTCCTACCGGGGATGCGGTTGCCTGgcgg > 1:2723783/1‑146 CAGACGAGCCAGCTGGGCGGGCCCAGCTACGTGAAGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCCTTCGCGGGTAAGCCCGCTCCTACAGGGGATGCGGTTGCCTGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGG < 2:2723783/150‑1 TGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCCTTCGCGGGTAAGCCCGCTCCTACAGGGGATGCGGTT > 1:2761339/1‑102 TGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCCTTCGCGGGTAAGCCCGCTCCTACAGGGGATGCGGTT < 2:2761339/102‑1 CGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCTCTTCGCGGGTAAGCCCGCTCCTACAGGGGATGCGGTTGCCTGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTA < 1:804410/150‑1 GATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCTTTCGCGGGTAAGCCCGCTCCTACAGGGGATGCGGTTGCCTGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGGTTTACCC < 1:1924177/150‑1 GCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCTTTCGCGGGTAAGCCCGCTCCTACAGGGGATGCGGTTGCCTGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGG < 2:141613/140‑1 GCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCTTTCGCGGGTAAGCCCGCTCCTACAGGGGATGCGGTTGCCTGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGG > 1:141613/1‑140 TTCGCGGGTAAGCCCGCTCCTACAGGGGATGCGGTTGCCTGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCATTCAAAGCTTTCTGGAGGAGTC < 2:743597/145‑1 TTCGCGGGTAAGCCCGCTCCTACAGGGGATGCGGTTGCCTGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCATTCAAAGCTTTCTGGAGGAGTC > 1:743597/1‑145 CGCGGGTAAGCCCGCTCCTACAGGGGATGCGGTTGCCTGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCATTCAAAGCTTTCTGGAGGAGTCCAGCTGC < 1:3015904/150‑1 GCGGGTAAGCCCGCTCCTACAGGGGATGCGGTTGCCTGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGGTTTACACGCGAAAGGGCCGGGCCTGCATTCAAAGCTTTCTGGAGGAGTCCAGCTGCA > 2:2199209/1‑150 GCGGGTAAGCCCGCTCCTACAGGGGATGCGGTTGCCTGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAG < 2:1837866/86‑1 GCGGGTAAGCCCGCTCCTACAGGGGATGCGGTTGCCTGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAG > 1:1837866/1‑86 GTAAGCCCGCTCCTACAGGGGATGCGGTTGCCTGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCATTCAAAGCTTTCTGGAGGAGTCCAGCTGCATCAG < 1:841426/150‑1 AGCCCAATCAAGTGGAGTGCCAGCCGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCTTTCGCGGGTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5827723‑5827881‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggtaaGCCCGCTCCTACAGGGGATGCGGTTGCCTGTAGGCGCGGGTTTGCCCGCGAGGAGGCCGGGGATGCGGTTGCCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGCCTGCATTCAAAGCTTTCTGGAGGAGTCCAGCTGCATCAG < NC_002947/5827967‑5827822 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |