| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 6077877 = | 111 (0.970) | 3 (0.030) | 3/196 | NT | 4.2% | intergenic (‑123/+115) | PP_5329/PP_5330 | phosphate ABC transporter substrate‑binding protein/MFS transporter |
| ? | NC_002947 | 6077977 = | 49 (0.530) | intergenic (‑223/+15) | PP_5329/PP_5330 | phosphate ABC transporter substrate‑binding protein/MFS transporter | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGGCCTGTGCGCCGTCGGTCTAGCCGTGGGCCTGTACCTGCTCGCCAACAAGCGCTGATCTGCGCTTCGGCTACTGGCCTCTTCGCGGCTAAAGCCGCTCCTACAGGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTAGCCGCGAAGAGGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6078049‑6077877‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggctttagccgcgaagaggccagTAGCCGAAGCGCAGATCAGCGCTTGTTGGCGAGCAGGTACAGGCCCACGGCTAGACCGACGGCGCACAGGCCTGCCACGTAGTAGGCAGGCGCCATCGGGCTCACCTTCAGCAGTGCGGTCACCACCATCGGCGTCAGCCCGCCAAAGA > NC_002947/6077977‑6078125 AGGCCTGTGCGCCGTCGGTCTAGCCGTGGGCCTGTACCTGCTCGCCAACAAGCGCTGATCTGCGCTTCGGCTACTGGCCTCTTCGCGGCTAAAGCCGCTCCTACAGGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAAC < 1:2263205/150‑1 GCCTGTGCGCCGTCGGTCTAGCCGTGGGCCTGTACCTGCTCGCCAACAAGCGCTGATCTGCGCTTCGGCTACTGGCCTCTTCGCGGCTAAAGCCGCTCCTACAGGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGG < 2:1352424/150‑1 GCCTGTGCGCCGTCGGTCTAGCCGTGGGCCTGTACCTGCTCGCCAACAAGCGCTGATCTGCGCTTCGGCTACTGGCCTCTTCGCGGCTAAAGCCGCTCCTACAGGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGG > 2:1589366/1‑150 TGTGCGCCGTCGGTCTAGCCGTGGGCCTGTACCTGCTCGCCAACAAGCGCTGATCTGCGCTTCGGCTACTGGCCTCTTCGCGGCTAAAGCCGCTCCTACAGGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTT < 2:2737106/150‑1 TGTGCGCCGTCGGTCTAGCCGTGGGCCTGTACCTGCTCGCCAACAAGCGCTGATCTGCGCTTCGGCTACTGGCCTCTTCGCGGCTAAAGCCGCTCCTACAGGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTT < 2:2582872/150‑1 TGTGCGCCGTCGGTCTAGCCGTGGGACTGTCCCTGCTCGCCTACAATCGCTGATCTGCGCTTCGGCTACTGGCCTCTTCGCGGCTAAAGCCGCTCCTACAGGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTT < 2:1569293/150‑1 GTGCGCCGTCGGTCTAGCCGTGGGCCTGTACCTGCTCGCCAACAAGCGCTGATCTGCGCTTCGGCTACTGGCCTCTTCGCGGCTAAAGCCGCTCCTACAGGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTT < 1:1461233/150‑1 TGCGCCGTCGGTCTAGCCGTGGGCCTGTACCTGCTCGCCAACAAGCGCTGATCTGCGCTTCGGCTACTGGCCTCTTCGCGGCTAAAGCCGCTCCTACAGGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTA < 2:1756687/150‑1 TGCGCCGTCGGTCTAGCCGTGGGCCTGTACCTGCTCGCAAACAAGCGCTGATCTGCGCTTCGGCTACTGGCCTCTTCGCGGCTAAAGCCGCCCCTACAGGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTA < 1:940924/150‑1 CGTCGGTCTAGCCGTGGGCCTGTACCTGCTCGCCAACAAGCGCTGATCTTCGCTTCGGCTACTGGCCTCTTCGCGGCTAAAGCCGCTCCTACAGGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTAGCCGC < 1:1976371/150‑1 CGTCGGTCTAGCCGTGGGCCTGTACCTGCTCGCCAACAAGCGCTGATCTGCGCTTCGGCTACTGGCCTCTTCGCGGCTAAAGCCGCTCCTACAGGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTA < 1:1990187/145‑1 CGTCGGTCTAGCCGTGGGCCTGTACCTGCTCGCCAACAAGCGCTGATCTGCGCTTCGGCTACTGGCCTCTTCGCGGCTAAAGCCGCTCCTACAGGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTA > 2:1990187/1‑145 CGGTCTAGCCGTGGGCCTGTACCTGCTCGCCAACAAGCGCTGATCTGCGCTTCGGCTACTGGCCTCTTCGCGGCTAAAGCCGCTCCTACAGGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGTAACGGCTTTAGCCGCGAA < 1:2916707/150‑1 GTCTAGCCGTGGGCCTGTACCTGCTCGCCAACAAGCGCTGATCTGCGCTTCGGCTACTGGCCTCTTCGCGGCTAAAGCCGCTCCTACAGGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTAGCCGCGAAGA < 2:1194363/150‑1 TCTAGCCGTGGGCCTGTACCTGCTCGCCAACAAGCGCTGATCTGCGCTTCGGCTACTGGCCTCTTCGCGGCTAAAGCCGCTCCTACAGGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTAGCCGCGAAGAG < 1:1589366/150‑1 TCTAGCCGTGGGCCTGTACCTGCTCGCCAACAAGCGCTGATCTGCGCTTCGGCTACTGGCCTCTTCGCGGCTAAAGCCGCTCCTACAGGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTAGCCGCGAAGAG > 1:761064/1‑150 GCCGTGGGCCTGTACCTGCTCGCCAACAAGCGCTGATCTGCGCTTCGGCTACTGGCCTCTTCGCGGCTAAAGCCGCTCCTACAGGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGG < 2:1140686/130‑1 GCCGTGGGCCTGTACCTGCTCGCCAACAAGCGCTGATCTGCGCTTCGGCTACTGGCCTCTTCGCGGCTAAAGCCGCTCCTACAGGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGG > 1:1140686/1‑130 CTGTACCTGCTCGCCAACAAGCGCTGATCTGCGCTTCGGCTACTGGCCTCTTCGCGGCTAAAGCCGCTCCTACAGGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTAGCCGCGAA < 1:198507/134‑1 CTGTACCTGCTCGCCAACAAGCGCTGATCTGCGCTTCGGCTACTGGCCTCTTCGCGGCTAAAGCCGCTCCTACAGGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTAGCCGCGAA > 2:198507/1‑134 CTGCTCGCCAACAAGCGCTGATCTGCGCTTCGGCTACTGGCCTCTTCGCGGCTAAAGCCGCTCCTACAGGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTA > 1:2532065/1‑120 CTGCTCGCCAACAAGCGCTGATCTGCGCTTCGGCTACTGGCCTCTTCGCGGCTAAAGCCGCTCCTACAGGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTA < 2:2532065/120‑1 cgAAGCGCAGATCAGCGCTTCGGCTACTGGCCTCTTCGCGGCTAAAGCCGCTCCTACAGGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAAC > 2:1473743/3‑103 cgAAGCGCAGATCAGCGCTTCGGCTACTGGCCTCTTCGCGGCTAAAGCCGCTCCTACAGGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAAC < 1:1473743/101‑1 CTTCGGCTACTGGCCTCTTCGCGGCTAAAGCCGCTCCTACAGGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTAGCCGCGAAGAG > 1:2960887/1‑104 CTTCGGATACTGGCCTCTTCGCGGCTAAAGCCGCTCCTACAGGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTAGCCGCGAAGAG < 2:2960887/104‑1 GCCTCTTCGCGGCTAAAGCCGCTCCTACAGGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTAGCCGCGAAGAGGCCAGTAGCCGAAGCGCAGATCAGCGCTTGTTGGCGAGCAGGTACAGGCCCACGGCTA > 2:566948/1‑150 GCGGCTAAAGCCGCTCCTACAGGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTAGC < 1:1978114/75‑1 GCGGCTAAAGCCGCTCCTACAGGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTAGC > 2:1978114/1‑75 CTAAAGCCGCCCCTACAGGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTAGCCGCGAAGAGGCCAGTAGCCGAAGCGCAGATCAGCGCTTTTTGGCGAGCAGGGACAGGCACACGGATCGGCCGACGGCGC > 2:1298519/1‑150 AAGCCGCTCCTACAGGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTAGCCGCGAAGAGGCCAGTAGCCGAAGCGCAGATCAGCGCTTGTTGGCGAGCAGGTACAGGCCCACGGCTAGACCGACGGCGCACA < 1:566948/150‑1 GGCTTTAGCCGCGAAGAGGCCAGTAGCCGAAGCGCAGATCAGCGCTTGTT < 2:530538/50‑1 GGCTTTAGCCGCGAAGAGGCCAGTAGCCGAAGCGCAGATCAGCGCTTGTT > 1:530538/1‑50 CTTTAGCCGCGAAGAGGCCAGTAGCCGAAGCGCAGATCAGCGCTTGTTGGCGAGCAGGTACAGGCCCACGGCTAGACCGACGGCGCACAGGCCTGCCACGTAGTAGGCAGGCGCCATCG > 2:802623/1‑119 CTTTAGCCGCGAAGAGGCCAGTAGCCGAAGCGCAGATCAGCGCTTGTTGGCGAGCAGGTACAGGCCCACGGCTAGACCGACGGCGCACAGGCCTGCCACGTAGTAGGCAGGCGCCATCG < 1:802623/119‑1 TAGCCGCGAAGAGGCCAGTAGCCGAAGCGCAGATCAGCGCTTGTTGGCGAGCAGGTACAGGCCCACGGCTAGACCGACGGCGCACAGGCCTGCCACGTAGTAGGCAGGCGCCATCGGGCTCACCTTCAGCAGTGCGGTCACCACCATCGG < 1:723688/150‑1 GCCGCGAAGAGGCCAGTAGCCGAAGCGCAGATCAGCGCTTGTTGGCGAGCAGGTACAGGCCCACGGCTAGACCGACGGCGCACAGGCCTGCCACGTAGTAGGCAGGCGCCATCGGGCTCACCTTCAGCAGTGCGGTCACCACC < 2:2278737/143‑1 GCCGCGAAGAGGCCAGTAGCCGAAGCGCAGATCAGCGCTTGTTGGCGAGCAGGTACAGGCCCACGGCTAGACCGACGGCGCACAGGCCTGCCACGTAGTAGGCAGGCGCCATCGGGCTCACCTTCAGCAGTGCGGTCACCACC > 1:2278737/1‑143 GAAGAGGCCAGTAGCCGAAGCGCAGATCAGCGCTTGTTGGCGAGCAGGTACAGGCCCACGGCTAGACCGACGGCGCACAGGCCTGCCACGTAGTAGGCAGGCGCCATCGGGCTCACCTTCAGCAGTGCGGTCACCACCATCGGCGTCAGC > 2:2114498/1‑150 AAGAGGCCAGTAGCCGAAGCGCAGATCAGCGCTTGTTGGCGAGCAGGTACAGGCCCACGGCTAGACCGACGGCGCACAGGCCTGCCAC < 2:2427086/88‑1 AAGAGGCCAGTAGCCGAAGCGCAGATCAGCGCTTGTTGGCGAGCAGGTACAGGCCCACGGCTAGACCGACGGCGCACAGGCCTGCCAC > 1:2427086/1‑88 GCCAGTAGCCGAAGCGCGGATCAGCGCTTGTTGGCGAGCAGGTACAGGCCCACGGCTAGACCGACGGCGCACAGGCCTGCCACGTAGTAGGCAGGCGCCATCGGGCTCACCTTCAGCAGTGCGGTCACGACCATCGGCGTCAGCCCGCCA > 2:1576282/1‑150 GCCAGTAGCCGAAGCGCAGATCAGCGCTTGTTGGCGAGCAGGTACAGGCCCACGGCTAGACCGACGGCGCACAGGCCTGCCACGTAGTAGGCAGGCGCCATCGGGCTCACC > 2:2231868/1‑111 GCCAGTAGCCGAAGCGCAGATCAGCGCTTGTTGGCGAGCAGGTACAGGCCCACGGCTAGACCGACGGCGCACAGGCCTGCCACGTAGTAGGCAGGCGCCATCGGGCTCACC < 1:2231868/111‑1 GCCAGTAGCCGAAGCGCAGATCAGCGCTTGTTGGCGAGCAGGTACAGGCCCACGGCTAGA > 1:900563/1‑60 GCCAGTAGCCGAAGCGCAGATCAGCGCTTGTTGGCGAGCAGGTACAGGCCCACGGCTAGA < 2:900563/60‑1 CAGTAGCCGAAGCGCATATCAGCGCTTGTTGGCGAGCAGGTACAGGCCCACGGCTAGACCGACGGCGCACAGGCCTGCCACGTAGTAGGCAGGCGCCATCGGGCTCACCTTCAGCAGTGCGGTCACCACCATCGGCGTCAGCCCGCCAAA > 2:734821/1‑150 CAGTAGCCGAAGCGCAGATCAGCGCTTGTTAGCGAGCAGGTACAGGCCCACGGCTAGACCGACGGCGCACAGGCCTGCCACGTAGTAGGCAGGCGCCATCGGGCTCACCTTCAGCAGTGCGGTCACCACCATCGGCGTCAGCCCGCCAAA > 1:308437/1‑150 GTAGCCGAAGCGCAGATCAGCGCTTGTTGGCGAGCAGGTACAGGCCCACGGCTAGACCGACGGCGCACAGGCCTGCCACGTAGTAGGCAGGCGCCATCGGGCTCACCTTCAGCAGTGCGGTCACCACCATCGGCGTCAGCCCGCCAAAGA > 1:274714/1‑150 AGGCCTGTGCGCCGTCGGTCTAGCCGTGGGCCTGTACCTGCTCGCCAACAAGCGCTGATCTGCGCTTCGGCTACTGGCCTCTTCGCGGCTAAAGCCGCTCCTACAGGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTAGCCGCGAAGAGGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6078049‑6077877‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggctttagccgcgaagaggccagTAGCCGAAGCGCAGATCAGCGCTTGTTGGCGAGCAGGTACAGGCCCACGGCTAGACCGACGGCGCACAGGCCTGCCACGTAGTAGGCAGGCGCCATCGGGCTCACCTTCAGCAGTGCGGTCACCACCATCGGCGTCAGCCCGCCAAAGA > NC_002947/6077977‑6078125 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |