| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 6177257 | 80 (0.700) | 4 (0.040) | 4/228 | NT | 4.8% | coding (284/861 nt) | atpG | ATP synthase subunit gamma |
| ? | NC_002947 | = 6177263 | 83 (0.780) | coding (278/861 nt) | atpG | ATP synthase subunit gamma | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTGATCGATGGCTCTTCGCCCAAGTGGCTGATCGCTGCTACGACGTTGCCGCCAAAGATGCGGAAGAAAGTCGCACCCTTGCTGCCGATCACGCACAGGTCGATTTCCACGCCCTGTTCGCGGTTTGCGCTCATGTCCTTGACCAGGGCCTTGAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/6177101‑6177257‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttgaacaCCAACCTGTTCAAGGCCCTGGTCAAGGACATGAGCGCAAACCGCGAACAGGGCGTGGAAATCGACCTGTGCGTGATCGGCAGCAAGGGTGCGACTTTCTTCCGCATCTTTGGCGGCAACGTCGTAGCAGCGATCAGCCACTTGGGCGAA < NC_002947/6177263‑6177115 TTGATCGATGGCTCTTCGCCCAAGTGGCTGATCGCTGCTACGACGTTGCCGCCAAAGATGCGGAAGAAAGTCGCACCCTTGCTGCCGATCACGCACAGGTCGATTTCCACGCCCTGTTCGCGGTTTGCGCTCATGTCCTTGACCAGGGCC < 2:1820072/150‑1 TGATCGATGGCTCTTCGCCCAAGTGGCTGGTCGCTGCTACGACGTTGCCGCCAAAGATGCGGAAGCCAGCCGCACCCTTGCTGCCGATCACGCGCAGGTCGATTTCCACGCCCTGTTCGCGGTTTGCGCTCATGTCCTTGACCAGGGCCT < 1:192060/150‑1 TGATCGATGGCTCTTCGCCCAAGTGGCTGATCGCTGCTACGACGTTGCCGCCAAAGATGCGGAAGAAAGTCGCACCCTTGCTGCCGATCACGCACAGGTCGATTTCCACGCCCTGTTCGCGGTTTGCGCTCATGTCCTTGACCAGGGCCT < 2:2440414/150‑1 CGATGGCTCTTCGCCCAAGTGGCTGATCGCTGCTACGACGTTGCCGCCAAAGATGCGGAAGAAAGTCGCACCCTTGCTGCCGATCACGCACAGGTCGATTTCCACGCCCTGTTCGCGGTTTGCGCTCATGTCCTTGACCAGGGCCTTGAA < 2:364872/150‑1 GATGGCTCTTCGCCCAAGTGGCTGATCGCTGCTACGACGTTGCCGCCAAAGATGCGGAAGAAAGTCGCACCCTTGCTGCTGGGCACGCACAGGTCGATTTCCACGCCCTGTTCGCGGCTTGCGGCCATGTCTTTTACCAGTTCCTTGAAC > 1:2972331/1‑150 ATGGCTCTTCGCCCAAGTGGCTGATCGCTGCTACGACGTTGCCGCCAAAGATGCGGAAGAAAGTCGCACCCTTGCTGCCGATCACGCACAGGTCGATTTCCACGCCCTGTTCGCGGTTTGCGCTCATGTCCTTGACCAGGGCCTTGAACA < 2:2159310/150‑1 ATGGCTCTTCGCCCAAGTGGCTGATCGCTGCTACGACGTTGCCGCCAAAGATGCGGAAGAAAGTCGCACCCTTGCTGCCGATCACGCACAGGTCGATTTCCACGCCCTGTTCGCGGTTTGCGCTCATGTCCTTGACCAGGGCCTTGAACA > 1:2159310/1‑150 TCTTCGCCCAAGTGGCTGATCGCTGCTACGACGTTGCCGCCAAAGATGCGGAAGAAAGTCGCACCCTTGCTGCCGATCACGCACAGGTCGATTTCCACGCCCTGTTCGCGGTTTGCGCTCATGTCCTTGACCAGGGCCTTGAACA < 1:1938555/145‑1 TCTTCGCCCAAGTGGCTGATCGCTGCTACGACGTTGCCGCCAAAGATGCGGAAGAAAGTCGCACCCTTGCTGCCGATCACGCACAGGTCGATTTCCACGCCCTGTTCGCGGTTTGCGCTCATGTCCTTGACCAGGGCCTTGAACA > 2:1938555/1‑145 TCTTCGCCCAAGTGGCTGATCGCTGCTACGACGTTGCCGCCAAAGATGCGGAAGAAAGTCGCACCCTTGCTGCCGATCACGCACAGGTCGATTTCCACGCCCTGTTCGCGGTTTGCGCTCATGTCCTTGACCAGGGCCTTGAA < 2:95107/143‑1 TCTTCGCCCAAGTGGCTGATCGCTGCTACGACGTTGCCGCCAAAGATGCGGAAGAAAGTCGCACCCTTGCTGCCGATCACGCACAGGTCGATTTCCACGCCCTGTTCGCGGTTTGCGCTCATGTCCTTGACCAGGGCCTTGAA > 1:95107/1‑143 GTCGATTTCCACGCCCTGTTCGCGGTTTGCGCTCATGTCCTTGACCAGGGCCTTGAACACCAACCTGTTCAAGGC < 2:2927165/75‑1 GTCGATTTCCACGCCCTGTTCGCGGTTTGCGCTCATGTCCTTGACCAGGGCCTTGAACACCAACCTGTTCAAGGC > 1:2927165/1‑75 GTCGATTTCCACGCCCTGTTCGCGGTTTGCGCTCATGTCCTTGACCAGGGCCTTGAACA < 2:1109751/59‑1 GTCGATTTCCACGCCCTGTTCGCGGTTTGCGCTCATGTCCTTGACCAGGGCCTTGAACA > 1:1109751/1‑59 ACGCCCTGTTCGCGGTTTGCGCTCATGTCCTTGACCAGGGCCTTGAACACCAACCTGTTCAAGGCCCT < 2:1956787/68‑1 ACGCCCTGTTCGCGGTTTGCGCTCATGTCCTTGACCAGGGCCTTGAACACCAACCTGTTCAAGGCCCT > 1:1956787/1‑68 TTGAACACCAACCTGTTCAAGGCCCTGGTCAAGGACATGAGCGCAAACCGCGAACAGGGCGTGGAGATCGACCTGTGCGTGATCGGCAGCAAGGGTGCGACTTTCTTCCGCATCTTTGGCGGCAACGTCGTAGCAGCGATCAGCCACTTG > 1:1743359/1‑150 TTGAACACCAACCTGTTCAAGGCCCTGGTCAAGGACATGAGCGCAAACCGCGAACAGGGCGTGGAAATCGACCTGTGCGTGATCGGCAGCAAGGGTGCGACTTTCTTCCGCATCTTTGGCGGCAACGTCGTAGCAGCGATCAGCCACTTG > 2:1658428/1‑150 TTGAACACCAACCTGTTCAAGGCCCTGGTCAAGGACATGAGCGCAAACCGCGAACAGGGCGTGGAAATCGACCTGTGCGTGATCGGCAGCAAGGGTGCGACTTTCTTCCGCATCTTTGGCGGCAACGTCGTAGCAGCGATCAGCCACTTG > 1:2261843/1‑150 TTGAACACCAACCTGTTCAAGGCCCTGGTCAAGGACATGAGCGCAAACCGCGAACAGGGCGTGGAAATCGACCTGTGCGTGATCGGCAGCAAGGGTGCGACTTTCTTCCGCATCTTTGGCGGCAACGTCGTAGCAGCGATCAGCCACTTG > 2:599288/1‑150 TTGAACACCAACCTGTTCAAGGCCCGGGTAAAGGACATGAGCGCAAACCGCGAACAGGGCGTGGAAATCGACCTGTGCGTGATCGGCAGCAAGGGTGCGGCTTTCTACCGCATCTTTGGCGGCAACGTCGTAGCAGCGATCAGCCACTTG > 1:2829475/1‑150 TTGAACACCAACCTGATCAAGGCCCTGGTCAAGGACATGAGCGCAAACCGCGAACAGGGCGTGGAAATCGACCTGT > 2:153485/1‑76 TTGAACACCAACCTGATCAAGGCCCTGGTCAAGGACATGAGCGCAAACCGCGAACAGGGCGTGGAAATCGACCTGT < 1:153485/76‑1 TGAACACCAACCTGTTCAAGGCCCTGGTCAAGGACATGAGCGCAAACCGCGAACAGGGCGTGGAAATCGACCTGTGCGTGATCGGCAGCAAGGGTGCGACTTTCTTCCGCATCTTTGGCGGCAACGTCGTAGCAGCGATCAGCCACTTGG < 2:804757/150‑1 GAACACCAACCTGTTCAAGGCCCTGGTCAAGGACATGAGCGCAAACCGCGAACAGGGCGTGGAAATCGACCTGTGCGTGATCGGCAGCAAGGGTGCGACTTTCTTCCGCATCTTTGGCGGCAACGTCGTAGCAGCGATCAGCCACTTGGG < 1:1717284/150‑1 GAACACCAACCTGTTCAAGGCCCTGGTCAAGGACATGAGCGCAAACCGCGAACAGGGCGTGGAAATCGACCTGTGCGTGATCGGCAGCAAGGGTGCGACTTTCTTCC < 2:177647/107‑1 GAACACCAACCTGTTCAAGGCCCTGGTCAAGGACATGAGCGCAAACCGCGAACAGGGCGTGGAAATCGACCTGTGCGTGATCGGCAGCAAGGGTGCGACTTTCTTCC > 1:177647/1‑107 ACCAACCTGTTCAAGGCCCTGGTCAAGGACATGAGCGCAAACCGCGAACAGGGCGTGGAAATCGACCTGTGCGTGATCGGCAGCAAGGGTGCGACTTTCTTCCGCATCTTTGGCGGCAACGTCGTAGCAGCGATCAGCCACTTGGGCGAA > 2:1842174/1‑150 TTGATCGATGGCTCTTCGCCCAAGTGGCTGATCGCTGCTACGACGTTGCCGCCAAAGATGCGGAAGAAAGTCGCACCCTTGCTGCCGATCACGCACAGGTCGATTTCCACGCCCTGTTCGCGGTTTGCGCTCATGTCCTTGACCAGGGCCTTGAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/6177101‑6177257‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttgaacaCCAACCTGTTCAAGGCCCTGGTCAAGGACATGAGCGCAAACCGCGAACAGGGCGTGGAAATCGACCTGTGCGTGATCGGCAGCAAGGGTGCGACTTTCTTCCGCATCTTTGGCGGCAACGTCGTAGCAGCGATCAGCCACTTGGGCGAA < NC_002947/6177263‑6177115 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |