| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 614281 = | 28 (0.240) | 8 (0.090) | 6/200 | NT | 21.9% | intergenic (‑97/+81) | dxs/ispA | 1‑deoxyxylulose‑5‑phosphate synthase/farnesyl diphosphate synthase |
| ? | NC_002947 | = 4675357 | 34 (0.360) | intergenic (+10/+94) | PP_4137/chrR | outer membrane siderophore receptor/chromate reductase | |||||
CAACGGCGTGACCGGGCGTTCGCGGGGGATCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAA‑GATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTG > NC_002947/614134‑614430 | acctgcgcaacctgaccaaccagcgctatgcagcgaccgtgacgccggcctacaacgacgccggccaggacaatgcccgttcgacaccgggcgaaggatttggcgtgtatgccggggtttcctacagcttccgctgacgggtgggcgCgg > 2:1507558‑M1/148‑150 (MQ=255)acctgcgcaacctgaccaaccagcgctatgcagcgaccgtgacgccggcctacaacgacgccggccaggacaatgcccgttcgacaccgggcgaaggatttggcgtgtatgccggggtttcctacagcttccgctgacgggtgggcgCgg > 2:2939657‑M1/148‑150 (MQ=255)acctgcgcaacctgaccaaccagcgctatgcagcgaccgtgacgccgccctacaacgacgccggccaggacaatgcccgttcgacaccgggcgaaggatttggcgtgtatgccggggtttcctacagcttccgctgacgggtgggcgCgg > 1:675613‑M1/148‑150 (MQ=255) cctgcgcaacctgaccaaccagcgctatgcagcgaccgtgacgccgacctacaacgacgccggccaggacaatgcccgttcgacaccgggcgaaggatttggcgtgtatgccggggtttcctacagcttccgctgacgggtgggcgCggg > 1:177687‑M1/147‑150 (MQ=255) aaCGGCGTGACCGGGCGTTCGCGGGGGATCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCggg < 1:1988340/150‑1 (MQ=255) ctgcgcaacctgaccaaccagcgctatgcagcgaccgtgacgccggcctacaacgacgccggccaggacaatgcccgttcgacaccgggcgaaggatttggcgtgtatgccggggtttcctacagcttccgctgacgggtgggcgCGGGt < 1:1323764‑M1/5‑1 (MQ=255) tgcgcaacctgaccaaccagcgctatgcagcgaccgtgacgccggcctacaacgacgccggccaggacaatgcccgttcgacaccgggcgaaggatttggcgtgtatgccggggtttcctacagcttccactgaccggggggcgCGGGtt > 2:3052759‑M1/145‑150 (MQ=255) gtctccacctgactatccagcggtatgcaacgaccctgacgccggcctacaacgacgccggccaggacaatgcccgttcgccaccgggcgaaggatttggcgtgtatgccggggtttcctacagcttccgctgacgggtgggcgCGGGtt > 2:1296812‑M1/145‑150 (MQ=255) gcaacctgaccaaccagcgctatgcagcgaccgtgacgccggcctacaacgacgccggccaggacaatgcccgttcgacaccgggcgaaggatttggcgtgtatgccggggtttcctacagcttccgctgacgggtgggcgCGGGTTTAc > 2:1443832‑M1/142‑150 (MQ=255) gcaacctgaccaaccagcgctatgcagcgaccgtgacgccggcctacaacgacgccggccaggacaatgcccgttcgacaccgggcgaaggatttggcgtgtatgccggggtttcctacagcttccgctgacgggtgggcgCGGGTTTAc < 1:1426438‑M1/9‑1 (MQ=255) cGTGACCGGGCGTTCGCGGGGGATCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTAc < 2:2245189/150‑1 (MQ=255) gTGACCGGGCGTTCGCGGGGGATCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCggg < 1:2114882/144‑1 (MQ=255) gTGACCGGGCGTTCGCGGGGGATCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCggg > 2:2114882/1‑144 (MQ=255) tGACCGGGCGTTCGCGGGGGATCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCgg > 2:2791096/1‑142 (MQ=255) tGACCGGGCGTTCGCGGGGGATCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCgg < 1:2791096/142‑1 (MQ=255) tGACCGGGCGTTCGCGGGGGATCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTAccc > 1:1797391/1‑150 (MQ=255) tGACCGGGCGTTCGCGGGGGATCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTAccc < 2:1797391/150‑1 (MQ=255) cctgaccaaccagcgctatgcagcgaccgtgacgccggcctacaacgacgccggccaggacaatgcccgttcgacaccgggcgaaggatttggcgtgtatgccggggtttcctacagcttccgctgacgggtgggcgCGGGTTTACCcgc > 1:150091‑M1/138‑150 (MQ=255) ctgaccaaccagcgctatgcagcgaccgtgacgccggcctacaacgacgccggccaggacaatgcccgttcgacaccgggcgaaggatttggcgtgtatgccggggtttcctacagcttccgctgacgggtgggcgCGGGTTTACCcgcg < 1:2510218‑M1/14‑1 (MQ=255) cGGGCGTTCGCGGGGGATCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGa > 2:1476689/1‑150 (MQ=255) ggccaaccagcgctatgcagcgaccgtgacgccggcctacaacgacgccggccaggacaatgcccgttcgacaccgggcgaaggatttggcgtgtatgccggggtttcctacagcttccgctgacgggtgggcgCGGGTTTACCCGCGaa > 2:646522‑M1/135‑150 (MQ=255) tccaaccagcgctgtccagcaaccgtgacgccggcctacaacgacgccggccaggacaatgcccgttcgacaccgggcgaaggatttggcgtgtatgccggggtttcctacagcttccgctgacgggtgggcgCGGGTTTACCCGCGAAt > 2:1426438‑M1/134‑150 (MQ=255) ggCGTTCGCGGGGGATCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAAt < 1:904004/150‑1 (MQ=255) caaccagcgctatgcagcgaccgtgacgccggcctacaacgacgccggccaggacaatgcccgttcgacaccgggcgaaggatttggcgtgtatgccggggtttcctacagcttccgctgacgggtgggcgCGGGTTTACCCGCGAATGc > 1:2540094‑M1/132‑150 (MQ=255) cGTTCGCGGGGGATCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGc < 1:2256362/150‑1 (MQ=255) tatgcagcgaccgtgacgccggcctacaacgacgccggccaggacaatgcccgttcgacaccgggcgaaggatttggcgtgtatgccggggtttcctacagcttccgctgacgggtgggcgCGGGTTTACCCGCGAATg > 2:1867286‑M1/122‑139 (MQ=255) tatgcagcgaccgtgacgccggcctacaacgacgccggccaggacaatgcccgttcgacaccgggcgaaggatttggcgtgtatgccggggtttcctacagcttccgctgacgggtgggcgCGGGTTTACCCGCGAATg < 1:1867286‑M1/18‑1 (MQ=255) aTCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTc > 1:2681649/1‑150 (MQ=255) ctctTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCaa < 2:2681649/150‑1 (MQ=255) ctctTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCaa < 1:1042605/150‑1 (MQ=255) ctTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAA‑Ga < 2:2605878/150‑1 (MQ=255) tGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAA‑GATc < 1:1976032/150‑1 (MQ=255) tGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAA‑GATc < 1:1769982/150‑1 (MQ=255) cgtgacgccggcctacaacgacgccggctaggacaatgcccgttcgacaccgggcgaaggatttggcgtgtatgccggggtttcctacagcttccgctgacgggtgggcgCGGGTTTACCCGCGAATGCGTCGGcaaattcaatgacgca > 1:1216954‑M1/111‑143 (MQ=255) cgtGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAA‑GATCGCATTcgc < 2:1943476/150‑1 (MQ=255) tGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAA‑GATCGCATTCGCgg < 2:2447284/150‑1 (MQ=255) tGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAA‑GATCGCATTCGCgg < 2:954933/150‑1 (MQ=255) tGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAA‑GATCGCATTCGCgg < 1:1476689/150‑1 (MQ=255) ccggcctacaacgacgccggccaggacaatgcccgttcgacaccgggcgaaggatttggcgtgtatgccggggtttcctacagcttccgctgacgggtgggcgCGGGTTTACCCGCGAATGCGTCGGCAAATTCAATGA‑CGCATTCGCgg > 2:1147372‑M1/104‑150 (MQ=255) ggCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAA‑GATCGCATTcgc > 1:628405/1‑139 (MQ=255) ggCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAA‑GATCGCATTcgc < 2:628405/139‑1 (MQ=255) aacgacgccggccaggacaatgcccgttcgacaccgggcgaaggatttggcgtgtatgccggggtttcctatagcttccgctgacgggtgggcgCGGGTTTACCCGCGAATGCGTCGGCAAATTCAATGA‑CGCATTcgc < 1:2416850‑M1/45‑1 (MQ=255) aacgacgccggccaggacaatgcccgttcgacaccgggcgaaggatttggcgtgtatgccggggtttcctatagcttccgctgacgggtgggcgCGGGTTTACCCGCGAATGCGTCGGCAAATTCAA‑TGACGCATTcgc > 2:2416850‑M1/95‑139 (MQ=255) aacgacgccggccaggacaatgcccgttcgacaccgggcgaaggatttggcgtgtatgccggggtttcctacagcttccgctgacgggtgggcgCGGGTTTAcc < 1:2872960‑M1/10‑1 (MQ=255) aacgacgccggccaggacaatgcccgttcgacaccgggcgaaggatttggcgtgtatgccggggtttcctacagcttccgctgacgggtgggcgCGGGTTTAcc > 2:2872960‑M1/95‑104 (MQ=255) ggtataGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAA‑GATCGCATTCGCgg < 1:405537/131‑1 (MQ=255) gTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAA‑GATCGCATTCGCgg > 2:405537/1‑133 (MQ=255) gtgtgtGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAAt > 1:2957191/1‑96 (MQ=255) gtgtgtGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAAt < 2:2957191/96‑1 (MQ=255) gacaatgcccgttcgacaccgggcgaaggatttggcgtgtatgccggggtttcctacagcttccgctgacgggtgggcgCgg > 2:2019656‑M1/80‑82 (MQ=255) gacaatgcccgttcgacaccgggcgaaggatttggcgtgtatgccggggtttcctacagcttccgctgacgggtgggcgCgg < 1:2019656‑M1/3‑1 (MQ=255) ccgttcgacaccgggcgaaggatttggcgtgtatgccggggtttcctacagcttccgctgacgggtgggcgCGGGTTTACCCGCGAATGCGTCGGCAAATTCAA‑TGACGCATTCGCggg > 2:1544882‑M1/72‑119 (MQ=255) ccgttcgacaccgggcgaaggatttggcgtgtatgccggggtttcctacagcttccgctgacgggtgggcgCGGGTTTACCCGCGAATGCGTCGGCAAATTCAA‑TGACGCATTCGCggg < 1:1544882‑M1/48‑1 (MQ=255) aGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAA‑GATCGCATTCGCggg > 1:564044/1‑119 (MQ=255) aGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAA‑GATCGCATTCGCggg < 2:564044/119‑1 (MQ=255) cgttcgacaccgggcgaaggatttggcgtgtatgccggggtttcctacagcttccgctgacgggtgggagCGGGTTTACCCGCGAATGCGTCGGCAAATTCAATGA‑CGCATTCGCgg < 1:272417‑M1/47‑1 (MQ=255) cgttcgacaccgggcgaaggatttggcgtgtatgccggggtttcctacagcttccgctgacgggtgggagCGGGTTTACCCGCGAATGCGTCGGCAAATTCAATGA‑CGCATTCGCgg > 2:272417‑M1/71‑117 (MQ=255) tACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTc < 1:1700676/51‑1 (MQ=255) tACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTc > 2:1700676/1‑51 (MQ=255) gcgGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCaa > 2:2820735/1‑50 (MQ=255) gcgGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCaa < 1:2820735/50‑1 (MQ=255) aTCGGGTTTACCCGCGAATGCGTCGGCAAATTCAA‑GATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCt > 1:1689615/1‑150 (MQ=255) aTCGGGTTTACCCGCGAATGCGTCGGCAAATTCAA‑GATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCt > 2:74604/1‑150 (MQ=255) tCGGGTTTACCCGCGAATGCGTCGGCAAATTCAA‑GATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAg < 1:1499571/72‑1 (MQ=255) tCGGGTTTACCCGCGAATGCGTCGGCAAATTCAA‑GATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAg > 2:1499571/1‑72 (MQ=255) tCGGGTTTACCCGCGAATGCGTCGGCAAATTCAA‑GATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCtt > 1:2746288/1‑150 (MQ=255) CGGGTTTACCCGCGAATGCGTCGGCAAATTCAA‑GATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTg > 2:2746288‑M1/1‑150 (MQ=255) | CAACGGCGTGACCGGGCGTTCGCGGGGGATCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAA‑GATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTG > NC_002947/614134‑614430 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |