New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 1621649 =130 (1.140)7 (0.060) 6/232 NT 5.4% coding (521/1392 nt) PP_1421 sensor histidine kinase TctE
?NC_002947 1621671 = 123 (1.130)coding (543/1392 nt) PP_1421 sensor histidine kinase TctE

Only 100 of 166 total aligned reads displayed.

TCTACAACGCCACTTACCTGGGCCAGGACGTTCGTGTGGTCAGCCTGCTGAAGCCGG‑‑TCAGCGAGCCGAACATGAACGGCATGGCAGAGATTCGCGTAGCCGAAACCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGCCGCGTTGCGGCCGTTGGAGCGCCTTCGCACAGCGGTGGAAGAACGCCAGCCGGACGACTTGCGAGCGTTGCCGGTGGTGCAGG  >  NC_002947/1621502‑1621798
                                                                                                                                                     |                                                                                                                                                     
 cgggcccagctcgcgctgcacctgcaccaccggcaacgctcgcaagtcgtccggctggcgttcttccaccgctgtgcgaaggcgctccaacggccgcaacgcggcactcacggcaaaccacaccatcaccaacgcccccagtgccagcAt                                                                                                                                                      >  1:2975428‑M1/149‑150 (MQ=255)
  tACAACGCCACTTACCTGGGCCAGGACGTTCGTGTGGTCAGCCTGCTGAAGCCGG‑‑TCAGCGAGCCGAACATGAACGGCATGGCAGAGATTCGCGTAGCCGAAACCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATAcc                                                                                                                                                   <  1:2025998/150‑1 (MQ=255)
  tACAACGCCACTTACCTGGGCCAGGACGTTCGTGTGGTCAGCCTG‑‑ACATCAGGAATCATCTAGCCGAACATGAACGGCATGGCAGAGATTCGCGTAGCCGAAACCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATAcc                                                                                                                                                   <  2:1618725/150‑1 (MQ=255)
   aCAACGCCACTTACCGGGGCCAGGCCGTTCGTGTGGTCAGCCTGCTGAGGCCGG‑‑TCAGCGAGCCGAACATGAACGGCATGGCAGAGATTCGCGTAGCCGAAACCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATAccc                                                                                                                                                  <  1:1885944/150‑1 (MQ=255)
    gcccagctcgcgctgcacctgcaccaccggcaacgctcgcaagtcgtccggctggcgttcttccaccgctgtgcgaaggcgctccaacggccgcaacgcggcactcacggcaaaccacaccatcaccaacgcccccagtgccagcATAcc                                                                                                                                                   >  2:1087264‑M1/146‑150 (MQ=255)
    gcccagctcgcgctgcacctgcaccaccggcaacgctcgcaagtcgtccggctggcgttcttccaccgctgtgcgaaggcgctccaacggcagcaacgcggcactcacggcaaaccacaccatcaccaacgcccccagtgccagcATAcc                                                                                                                                                   >  1:980302‑M1/146‑150 (MQ=255)
     cccagctcgcgctgcacctgcaccaccggcaacgctcgcaagtcgtccggctggcgttcttccaccgctgtgggaaggcgctccaacggccgcaccgcgcctttcactgcagaccacaccatcaccaacgcccccagtgccagcATAccc                                                                                                                                                  <  1:2216559‑M1/6‑1 (MQ=255)
      ccagcacgcgctgcacctgcaccaccggcaacgctcgcaagtcgtccggctggcggtcttccaccgctgtgcgaaggcgctccaacggccgcaacgcggcactcacggcaaaccacaccatcaccaacgcccccagtgccagcATacccc                                                                                                                                                 <  2:2491144‑M1/7‑2 (MQ=255)
       cGCCACTTACCTGGGCCAGGACGTTCGTGTGGTCAGCCTGCTGAAGCCGG‑‑TCAGCGAGCCGAACATGAACGGCATGGCAGAGATTCGCGTAGCAGAAACCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCctgct                                                                                                                                              <  2:454830/150‑1 (MQ=255)
         ccACTTACCTGGGCCAGGACGTTCGTGTGGTCAGCCTGCTGAAGCCGG‑‑TCAGCGAGCCGAACATGAACGGCATGGCAGAGATTCGCGTAGCCGAAACCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCCtgctgc                                                                                                                                            >  2:1065420/1‑150 (MQ=255)
              tACCTGGGCCAGGACGTTCGTGTGGTCAGCCTGCTGAAGCCGG‑‑TCAGCGAGCCGAACATGAACGGCATGGCAGAGATTCGCGTAGCCGAAACCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTg                                                                                                                                       <  1:1613384/150‑1 (MQ=255)
               aCCTGGGCCAGGACGTTCGTGTGGTCAGCCTGCTGAAGCCGG‑‑TCAGCGAGCCGAACATGAACGGCATGGCAGAGATTCGCGTAGCCGAAACCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTgg                                                                                                                                      <  1:345749/150‑1 (MQ=255)
                ccTGGGCCAGGACGTTCGTGTGGTCAGCCTGCTGAAGCCGG‑‑TCAGCGAGCCGAACATGAACGGCATGGCAGAGATTCGCGTAGCCGAAACCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTggg                                                                                                                                     >  1:2553914/1‑150 (MQ=255)
                  tGGGCCAGGACGTTCGTGTGGTCAGCCTGCTGCAAGCGT‑‑GCAGCGAGCCGAACATGAACGGCATGGCAGAGATTCGCGTAGCCGAAACCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTa                                                                                                                                   >  1:1780989/1‑150 (MQ=255)
                     gCCAGGACGTTCGTGTGGTCAGCCTGCTGAAGCCGG‑‑TCAGCGAGCCGAACATGAACGGCATGGCAGAGATTCGCGTAGCCGAAACCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCctgct                                                                                                                                              <  1:579134/136‑1 (MQ=255)
                       cAGGACGTTCGTGTGGTCAGCCTGCTGAAGCCGG‑‑TCAGCGAGCCGAACATGAACGGCATGGCAGAGATTCGCGTAGCCGAAACCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTg                                                                                                                              >  2:1612828/1‑150 (MQ=255)
                        aGGACGTTCGTGTGGTCAGCCTGCTGAAGCCGG‑‑TCAGCGAGCCGAACATGAACGGCATGGCAGAGATTCGCGTAGCCGAAACCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTgg                                                                                                                             >  2:2303834/1‑150 (MQ=255)
                         cccccccggcaacgctcgcaagtcgtccggctggcgttcttccaccgctgtgcgaaggcgctccaacggccgcaacgcggcactcacggcaaaccacaccatcaccaacgcccccagtgccagcATACCCTGCTGCGCCTGGGTATGCTg                                                                                                                              >  2:220220‑M1/125‑150 (MQ=255)
                            caccggcaacgctcgcaagtcgtccggctggcgttcttccaccgctgtgcgaaggcgctccaacggccgcaacgcggcactcacggcaaaccacaccatcaccaacgcccccagtgccagcATACCCTGCTGCGCCTGGGTATGCTg                                                                                                                              >  1:1287114‑M1/122‑147 (MQ=255)
                              ttCGTGGGGTCAGCCTGCTGAAGCCGG‑‑TCAGCGAGCCGAACATGAACGGCATGGCAGAGATTCGTGTAGCCGAAACCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTgg                                                                                                                       <  1:2185794/150‑1 (MQ=255)
                               tCGTGTGGTCAGCCTGCTGAAGCCGG‑‑TCAGCGAGCCGAACATGAACGGCATGGCAGAGATTCGCGTAGCCGAAACCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTggg                                                                                                                      <  1:1346630/150‑1 (MQ=255)
                                   gtgGTCAGCCTGCTGAAGCCGG‑‑TCAGCGAGCCGAACATGAACGGCATGGCAGAGATTCGCGTAGCCGAAACCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCg                                                                                                                  >  2:1117903/1‑150 (MQ=255)
                                    tgGTCAGCCTGCTGAAGCCGG‑‑TCAGCGAGCCGAACATGAACGGCATGGCAGAGATTCGCGTAGCCGAAACCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATAccc                                                                                                                                                  >  2:1487857/1‑117 (MQ=255)
                                      gTCAGCCTGCTGAAGCCGG‑‑TCAGCGAGCCGAACATGAACGGCATGGCAGAGATTCGCGTAGCCGAAACCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTg                                                                                                               >  2:788147/1‑150 (MQ=255)
                                      gTCAGCCTGCTGAAGCCGG‑‑TCAGCGAGCCGAACATGAACGGCATGGCAGAGATTCGCGTAGCCGAAACCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTg                                                                                                               <  2:2356190/150‑1 (MQ=255)
                                        cAGCCTGCTGAAGCCGG‑‑TCAGCGAGCCGAACATGAACGGCATGGCAGAGATTCGCGTAGCCGAAACCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGt                                                                                                             <  1:882506/150‑1 (MQ=255)
                                          gcaagtcgtccggctggcgttcttccaccgctgtgcgaaggcgctccaacggccgcaacgcggcactcacggcaaaccacaccatcaccaacgcccccagtgccagcATAcc                                                                                                                                                   <  2:233876‑M1/5‑1 (MQ=255)
                                          gcaagtcgtccggctggcgttcttccaccgctgtgcgaaggcgctccaacggccgcaacgcggcactcacggcaaaccacaccatcaccaacgcccccagtgccagcATAcc                                                                                                                                                   >  1:233876‑M1/108‑112 (MQ=255)
                                          gCCTGCTGAAGCCGG‑‑TCAGCGAGCCGAACATGAACGGCATGGCAGAGATTCGCGTAGCCGAAACCGAGGAAGCGCGGGTGCGCATGGCAAGAGGGTTGATGGCCGATACCGTGCTGCGACTGGGTATGCTGGAACTTGGGGGGTTGGTGa                                                                                                           >  2:1307090/1‑150 (MQ=255)
                                             tgctgAAGCCGG‑‑TCAGCGAGCCGAACATGAACGGCATGGCAGAGATTCGCGTAGCCGAAACCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGt                                                                                                                                    <  1:1788274/122‑1 (MQ=255)
                                             tgctgAAGCCGG‑‑TCAGCGAGCCGAACATGAACGGCATGGCAGAGATTCGCGTAGCCGAAACCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATgg                                                                                                        >  2:1268988/1‑150 (MQ=255)
                                               ctgAAGCCGG‑‑TTAGCGAGCCGAACATGAACGGCATGGCAGAGATTCGCGTAGCCGAAACCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGgtg                                                                                                      >  2:3034775/1‑150 (MQ=255)
                                                tgAAGCCGG‑‑TCAGCGAGCCGAACATGAACGGCATGGCAGAGATTCGCGTAGCCGAAACCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGgtgt                                                                                                     >  2:127642/1‑150 (MQ=255)
                                                 gAAGCCGG‑‑TCAGCGAGCCGAACATGAACGGCATGGCAGAGATTCGCGTAGCCGAAACCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGtgtg                                                                                                    >  1:2098304/1‑150 (MQ=255)
                                                    gCCGG‑‑TCAGCGAGCCGAACATGAACGGCATGGCAGAGATTCGCGTAGCCGAAACCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGtt                                                                                                 >  2:781279/1‑150 (MQ=255)
                                                    gCCGG‑‑TCAGCGAGCCGAACATGAACGGCATGGCAGAGATTCGCGTAGCCGAAACCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGtt                                                                                                 <  1:1268988/150‑1 (MQ=255)
                                                        g‑‑TCAGCGAGCCGAACATGAACGGCATGGCAGAGATTCGCGTAGCCGAAACCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGcc                                                                                             <  1:768158/150‑1 (MQ=255)
                                                        g‑‑TCAGCGAGCCGAACATGAACGGCATGGCAGAGATTCGCGTAGCCGAAACCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATAACCAGGCTCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGcc                                                                                             >  2:2386484/1‑150 (MQ=255)
                                                           tCAGCGAGCCGAACATGAACGGCATGGCAGAGATTCGCGTAGCCGAAACCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCg                                                                                            >  1:1563246/1‑150 (MQ=255)
                                                            cAGCGAGCCGAACATGAACGGCATGGCAGAGATTCGCGTAGCCGAAACCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGt                                                                                           <  2:2292325/150‑1 (MQ=255)
                                                             aGCGAGCCGAACATGAACGGCATGGCAGAGATTCGCGTAGCCGAAACCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTg                                                                                          >  1:1178332/1‑150 (MQ=255)
                                                              gCGAGCCGAACATGAACGGCATGGCAGAGATTCGCGTAGCCGAAACCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGa                                                                                         <  2:2142335/150‑1 (MQ=255)
                                                                    cGAACATGAACGGCATGGCAGAGATTCGCGTAGCCGAAACCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGt                                                                                           <  1:2025418/142‑1 (MQ=255)
                                                                     gAACATGAACGGCATGGCAGAGATTCGCGTAGCCGAAACCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCctgct                                                                                                                                              >  2:596092/1‑90 (MQ=255)
                                                                     gAACATGAACGGCATGGCAGAGATTCGCGTAGCCGAAACCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGa                                                                                         <  1:669991/143‑1 (MQ=255)
                                                                     gAACATGAACGGCATGGCAGAGATTCGCGTAGCCGAAACCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGa                                                                                         >  2:669991/1‑143 (MQ=255)
                                                                     gAACATGAACGGCATGGCAGAGATTCGCGTAGCCGAAACCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGCcgc                                                                                  >  2:2706286/1‑150 (MQ=255)
                                                                        cATGAACGGCATGGCAGAGATTCGCGTAGCCGAAACCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGCCGCGtt                                                                               <  1:1307090/150‑1 (MQ=255)
                                                                        cATGAACGGCATGGCAGAGATTCGCGTAGCCGAAACCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGCCGCGtt                                                                               >  2:1597537/1‑150 (MQ=255)
                                                                        cATGAACGGCATGGCAGAGATTCGCGTAACCGAAACCGAGTAGGCGCGGGTGTGCATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGTGTATGCTGGCACTGGGGGCGTGGGTGATGGTGTGGTTTGCGTTGAGTGCCGCGtt                                                                               >  2:621741/1‑150 (MQ=255)
                                                                          tGAACGGCATGGCAGAGATTCGCGTAGCCGAAACCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATTGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGCCGCGTTGc                                                                             <  1:1597537/150‑1 (MQ=255)
                                                                            aaCGGCATGGCAGAGATTAGCGTAGCCGAAACCGAGGAAGCGCGGGGGCGCATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGCCGCGTTGCgg                                                                           <  2:939877/150‑1 (MQ=255)
                                                                                  aTGGCAGAGATTCGCGTAGCCGAAACCGAGGAAGGGCGGGTGCTCATGGCCCGAGGGTTGATGGCCGATATCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGCCGCGTTGCGGCCGTTg                                                                     <  2:1782083/150‑1 (MQ=255)
                                                                                   tGGCAGAGATTCGCGTAGCCGAAACCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGCCGCGTTGCGGCCGTTgg                                                                    >  1:1983039/1‑150 (MQ=255)
                                                                                       agagATTCGCGTAGCCGAAACCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGt                                                                                                                 >  1:1694141/1‑101 (MQ=255)
                                                                                       agagATTCGCGTAGCCGAAACCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGc                                                                                     <  2:874721/129‑1 (MQ=255)
                                                                                        gagaTTCGCGTAGCCGAAACCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCTTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGCCGCGTTGCGGCCGTTGGAgcgc                                                               >  1:238802/1‑150 (MQ=255)
                                                                                         agaTTCGCGTAGCCGAAACCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGCCGCGTTGCGGCCGTTGGAGCGcc                                                              <  2:2553914/150‑1 (MQ=255)
                                                                                               gcgTAGCCGAAACCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGCCGCGTTGCGGCCGTTGGAGCGCCTTCGca                                                        >  2:2627216/1‑150 (MQ=255)
                                                                                                   aGCCGAAACCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGCCGCGTTGCGGCCGTTGGAGCGCCTTCGCACAGc                                                    >  1:2556063/1‑150 (MQ=255)
                                                                                                    gCCGAAACCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGCCGCGTTGCGGCCGTTGGAGCGCCTTCGCACAg                                                     >  1:1885589/1‑148 (MQ=255)
                                                                                                     ccGAAACCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGt                                                                                                  >  1:2348588/1‑102 (MQ=255)
                                                                                                      cGAAACCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGCCGCGTTGCGGCCGTTGGAGCGCCTTCGCACAGCGGt                                                 <  1:781279/150‑1 (MQ=255)
                                                                                                      cGAAACCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGCCGCGTTGCGGCCGTTGGAGCGCCTTCGCACAGCGGt                                                 <  2:3038378/150‑1 (MQ=255)
                                                                                                       gAAACCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGCCGCGTTGCGGCCGTTGGAGCGCCTTCGCACAGCGGTg                                                <  2:1983039/150‑1 (MQ=255)
                                                                                                          aCCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGCCGCGTTGCGGCCGTTGGAGCGCCTTCGCACAGCGGTGgaa                                             <  1:3034775/150‑1 (MQ=255)
                                                                                                          aCCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGCCGCGTTGCGGCCGTTGGAGCGCCTTCGCACAGCGGTGgaa                                             <  2:1563246/150‑1 (MQ=255)
                                                                                                            tcacggcaaaccacaccatcaccaacgcccccagtgccagcATACCCTGCTGCGCCTGGGTATg                                                                                                                                 <  2:980106‑M1/23‑1 (MQ=255)
                                                                                                              aGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGa                                                                                                           <  1:1446616/84‑1 (MQ=255)
                                                                                                              aGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGcc                                                                                    <  1:270491/107‑1 (MQ=255)
                                                                                                              aGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGCCGCGTTGCGGCCGTTGGAGCGCCTTCGCACAGCGGTGGAAGAAc                                         <  1:1065420/150‑1 (MQ=255)
                                                                                                                gAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGCCGCGTTGCGGCCGTTGGAGCGCCTTc                                                           >  2:2747475/1‑130 (MQ=255)
                                                                                                                   gcgcGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGCCGCGTTGCGGCCGTTGGAGCGCCTTCGCACAGCGGTGGAAGAACGcc                                      >  1:1237695/1‑148 (MQ=255)
                                                                                                                   gcgcGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGCCGCGTTGCGGCCGTTGGAGCGCCTTCGCACAGCGGTGGAAGAACGcc                                      <  2:1237695/148‑1 (MQ=255)
                                                                                                                        ggTGCGCATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGCCGCGTTGCGGCCGTTGGAGCGCCTTCGCACAGCGGTGGAAGAACGCTAGCCGga                               <  1:2826865/150‑1 (MQ=255)
                                                                                                                           gcgcATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGCCGCGTTGCGGCCGTTGGACCGCCTTCGCACAGCGGTGGAAGAACGCCAGCCGgacga                            <  2:1780989/150‑1 (MQ=255)
                                                                                                                            catcaccaacgccgccagtgccagcATACCCTGCTGCGCCTGGGTATGc                                                                                                                                >  1:2540083‑M1/26‑49 (MQ=255)
                                                                                                                             gcATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGc                                                                                     >  2:1826937/1‑91 (MQ=255)
                                                                                                                              cATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGCCGCGTTGCGGCCGTTGGAGCGCCTTCGCACAGCGGTg                                                <  2:1422967/127‑1 (MQ=255)
                                                                                                                              cATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGCCGCGTTGCGGCCGTTGGAGCGCCTTCGCACAGCGGTg                                                >  1:1422967/1‑127 (MQ=255)
                                                                                                                                  gCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGCCGCGTTGCGGCCGTTGGAGCGCCTTCGCACAGCGGTGGAAGAACGCCAGCCGGACGACTTGCGa                     >  1:584364/1‑150 (MQ=255)
                                                                                                                                   cccGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGCCGCGTTGCGGCCGTTGGAGCGCCTTCGCACAGCGGTGGAAGAACGCCAGCCGGACGACTTGCGAg                    >  2:1142896/1‑150 (MQ=255)
                                                                                                                                   cccGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACGGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGCCGCGTTGCGGCCGTTGGAGCGCCTTCGCACAGCGGTGGAAGAACGCCAGCCGGACGACTTGCGAg                    >  2:2735837/1‑150 (MQ=255)
                                                                                                                                    ccGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGAGACGGTGGTGATGGTGTGGTTTGCCGTGAGTGCCGCGTTGCGGCCGTTGGAGCGCCTTCGCACAGCGGTGGAAGAACGCCAGCCGGACGACTTGCGAGc                   >  1:220287/1‑150 (MQ=255)
                                                                                                                                     cGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATg                                                                                                         >  1:205998/1‑63 (MQ=255)
                                                                                                                                     cGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATg                                                                                                         <  2:205998/63‑1 (MQ=255)
                                                                                                                                         ggTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGCCGCGTTGCGGCCGTTGGAGCGCCTTCGCACAGCGGTGGAAGAACGCCAGCCGGACGACTTGCGAGCGTTGc              <  1:2706286/150‑1 (MQ=255)
                                                                                                                                          gTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGCCGCGTTGCGGCCGTTGGAGCGCCTTCGCACAGCGGTGGAAGAACGCCAGCCGGACGACTTGCGAGCGTTGcc             <  1:2303834/150‑1 (MQ=255)
                                                                                                                                                ggCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGCCGCGTTGCGGCCGTTGGAGCGCCTTCGCACAGCGGTGGAAGAACGCCAGCCGGACGACTTGCGAGCGTTGCCggtggt       >  1:1364874/1‑150 (MQ=255)
                                                                                                                                                ggCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGCGATGGTGTGGTTTGCCGTGAGTGCCGCGTTGCGGCCGTTGGAGCGCCTTCGCACAGCGGTGGAAGAACGCCAGCCGGACGACTTGCGAGCGTTGCCggtggt       <  2:20243/150‑1 (MQ=255)
                                                                                                                                                   cGATACCCTGCTGCGCCTTGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCAGTGAGTGCCGCGTTGCGGCCGTTGGAGCGCCTTCGCACAGCGGTGGAAGAACGCCa                                     <  1:2091122/117‑1 (MQ=255)
                                                                                                                                                   cGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGCCGCGTTGCGGCCGTTGGAGCGCCTTCGCACAGCGGTGGAAGAACGCCAGCCGGACGACTTGCGAGCGTTGCCGGTggtgca    >  1:895396/1‑150 (MQ=255)
                                                                                                                                                   cGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGCCGCGTTGCGGCCGTTGGAGCGCCTTCGCACAGCGGTGGAAGAACGCCAGCCGGACGACTTGCGAGCGTTGCCGGTggtgca    <  2:1364874/150‑1 (MQ=255)
                                                                                                                                                   cGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGCCGCGTTGCGGCCGTTGGAGCGCCTTCGCACAGCGGTGGAAGAACGCCAGCCGGACGACTTGCGAGCGTTGCCGGTggtgca    >  2:1546178/1‑150 (MQ=255)
                                                                                                                                                   cGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGCCGCGTTGCGGCCGTTGGAGCGCCTTCGCACAGCGGTGGAAGAACGCCAGCCGGACGACTTGCGAGCGTTGCCGGTggtgc     >  2:2555135/1‑149 (MQ=255)
                                                                                                                                                   cGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCAGTGAGTGCCGCGTTGCGGCCGTTGGAGCGCCTTCGCACAGCGGTGGAAGAACGCCa                                     >  2:2091122/1‑117 (MQ=255)
                                                                                                                                                   cGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGAGTTGGTGATGGTGTGGTTTGCCGTGAGTGCCGCGTTGCGGCCGTTGGAGCGCCTTCGCACAGCGGTGGAAGAACGCCAGCCGGACGACTTGCGAGCGTTGCCGGTggtgca    >  2:924152/1‑150 (MQ=255)
                                                                                                                                                    gATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGCCGCGTTGCGGCCGTTGGAGCGCCTTCGCACAGCGGTGGAAGAACGCCAGCCGGACGACTTGCGAGCGTTGCCGGTggtgcag   <  2:1674656/150‑1 (MQ=255)
                                                                                                                                                    gATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGCCGCGTTGCGGCCGTTGGAGCGCCTTCGCACAGCGGTGGAAGAACGCCAGCCGGACGACTTGCGAGCGTTGCCGGTggtgcag   <  1:1036183/150‑1 (MQ=255)
                                                                                                                                                     ATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGCCGCGTTGCGGCCGTTGGAGCGCCTTCGCACAGCGGTGGAAGAACGCCAGCCGGACGACTTGCGAGCGTTGCCGGTggtgcagg  >  1:871558‑M1/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
TCTACAACGCCACTTACCTGGGCCAGGACGTTCGTGTGGTCAGCCTGCTGAAGCCGG‑‑TCAGCGAGCCGAACATGAACGGCATGGCAGAGATTCGCGTAGCCGAAACCGAGGAAGCGCGGGTGCGCATGGCCCGAGGGTTGATGGCCGATACCCTGCTGCGCCTGGGTATGCTGGCACTGGGGGCGTTGGTGATGGTGTGGTTTGCCGTGAGTGCCGCGTTGCGGCCGTTGGAGCGCCTTCGCACAGCGGTGGAAGAACGCCAGCCGGACGACTTGCGAGCGTTGCCGGTGGTGCAGG  >  NC_002947/1621502‑1621798

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.