New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5033687	0 (0.000)	3 (0.030)	3/226	NT	100%	coding (78/336 nt)	PP_4438	transposase
	?	NC_002947	= 5036691	NA (NA)					coding (134/336 nt)	PP_4442	transposase

CAAGTGATCACGGTGAAATGGCCAGCCTCGGATCCCGAGGGTTGTGCGCAATTTATTCGGGCTTTCGCTCAATGATCCGCATCGATGCCATCTGGCTGGCCACCGAGCCGATGGACATGCGCGCTGGCACCGAGACAGCATTGGCCCGGGTGATTGCGGTGTTTGGTGCGGCGAAGCCGCACTGCGCTTATCTGTTTGCCAATCGCCGGGCTAACCGAATGAAAGTACTGGTGCACGACGGCGTGGGCGTCTGGCTTGCCGCGCGGCGCCTGAATCAAGGCAAGTTTCACTGGCCCG  >  NC_002947/5033539‑5033835                                                                                                                                                     |                                                                                                                                                     cAAGTGATCACGGTGAAATGGCCAGCCTCGGATCCCGAGGGTTGTGCGCAATTTATTCGGGCTTTCGCTCAATGATCCGCATCGATGCCATCTGGCTGGCCACCGAGCCGATGGACATGCGCGCTGGCACCGAGACAGCATTGGCCCGGa                                                                                                                                                     <  2:2106926‑M1/150‑2 (MQ=255)                                    cGAGGGTTGTGCGCAATTTATTCGGGCTTTCGCTCAATGATCCGCATCGATGCCATCTGGCTGGCCACCGAGCCGATGGACATGCGCGCTGGCACCGAGACAGCATTGGCCCGG                                                                                                                                                      <  2:536229‑M1/114‑1 (MQ=255)                                    cGAGGGTTGTGCGCAATTTATTCGGGCTTTCGCTCAATGATCCGCATCGATGCCATCTGGCTGGCCACCGAGCCGATGGACATGCGCGCTGGCACCGAGACAGCATTGGCCCGG                                                                                                                                                      >  1:536229‑M1/1‑114 (MQ=255)                                          ttGTGCGCAATTTATTCGGGCTTTCGCTCAATGATCCGCATCGATGCCATCTGGCTGGCCACCGAGCCGATGGACATGCGCGCTGGCACCGAGACAGCATTAGCCCGGcgattggcgaacagataagcgcagtgcggcttcgccgcaccg                                                                                                            >  2:2309239‑M1/1‑108 (MQ=255)                                                          cGGGCTTTCGCTCAATGATCCGCATCGATGCCATCTGGCTGGCCACCGAGCCGATGGACATGCGCGCTGGCACCGAGACAGCATTAGCCCGGcgattggcgaacagataagcgcagtgcggcttcgccgcaccgaacaccgcaatcaccc                                                                                            <  1:2309239‑M1/150‑59 (MQ=255)                                                                  cGCTCAATGATCCGCATCGATGCGATCTGGCTGGCCACCGAGCCGATGGATATGCGCGCCGGCACCGAAACGGCATTGGCCCGGcgattggcgaacagataagcgcagtgcggcttcgccgcaccgaacaccgcgatcacccgggccaat                                                                                    <  2:1681925‑M1/150‑67 (MQ=255)                                                                                                                                               ggCCCGGcgattggcgaacagataagcgcagtgcggcttcgccgcaccgaacaccgcgatcacccgggccaatgccgtttcggtgccggcgcgcatatccatcggctcggtggccagccagatcgcatcgatgcggatcattgagcgaca       <  2:1743323‑M1/150‑144 (MQ=255)                                                                                                                                                  ccGGcgattggcgaacagataagcgcagtgcggcttcgccgcaccgagaaccgcgatcacccgggccaatgccgtttcggtgccggcgcgcatatccatcggctcggtggccagcgagatcgcatcgatgcggaccattgagcgacagcc    >  2:538430‑M1/1‑4 (MQ=255)                                                                                                                                                  ccGGcgattggcgaacagataagcgcagtgcggcttcgccgcaccgaacaccgcgatcacccgggccaatgccgtttcggtgccggcgcgcatatccatcggctcggtggccagccagatcgcatcgatgcggatcattgagcgacagcc    <  1:2559450‑M1/150‑147 (MQ=255)                                                                                                                                                  ccGGcgattggcgaacagataagcgcagtgcggcttcgccgcaccgaacaccgcgatcacccgggccaatgccgtttcggtgccggcgcgcatatccatcggctcggtggccagccagatcgcatcgatgcggatcattcagcgacggcc    >  2:1753302‑M1/1‑4 (MQ=255)                                                                                                                                                  ccGGcgattggcgaacagataagcgcagtgcggcttcgccgcaccgaacaccgcgatcacccgggccaatgccgtttcggtgc                                                                       >  2:1177752‑M1/1‑4 (MQ=255)                                                                                                                                                  ccGGcgattggcgaacagataagcgcagtgcggcttcgccgcaccgaacaccgcgatcacccgggccaatgccgtttcggtgc                                                                       <  1:1177752‑M1/83‑80 (MQ=255)                                                                                                                                                   cGGcgattggcgaacagataagcgcagtgcggcttcgccgcaccgaacaccgcgatcacccgggccaatgccgtttcggtgccggcgcgcatatccatcggctcggtggccagccagatcgcatcgatgcggatcattgagcgacagccc   <  1:6829‑M1/150‑148 (MQ=255)                                                                                                                                                   cGGcgattggcgaacagataagcgcagtgcggcttcgccgcaccgaacaccgcgatcacccgggccaatgccgtttcggtgccggcgcgcatatccatcggctcggtggccagccagatcgcatcaatgcggatcattgagcgacagccc   >  1:52094‑M1/1‑3 (MQ=255)                                                                                                                                                    ggcgattggcgaacagataagcgcagtgcggcttcgccgcaccgaacaccgcgatcacccgggcccatgccgtttcggtgccggcgcgcatatccatcggctcggtggccagccagatcgcatcgatgcggatcattgggcgacagcccg  >  1:264049‑M1/1‑2 (MQ=255)                                                                                                                                                    ggcgattggcgaacagataagcgcagtgcggcttcgccgcaccgaacaccgcgatcacccgggccaatgccgtttcggtgccggcgcgcatatccatcggctcggtggccagccagatcgcatcgatgcggatcattgagcgacagcccg  >  2:537250‑M1/1‑2 (MQ=255)                                                                                                                                                    ggcgattgccaaacagctaggcacagtgcggcttcgccgcaccgaacaccgggatcacccgggccaatgccgtttcggtgccggcgcgcatatccatcggctcggtggccagccagatcgcatcgatgcggatcattgagcgacagcccg  <  2:1473624‑M1/150‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                     CAAGTGATCACGGTGAAATGGCCAGCCTCGGATCCCGAGGGTTGTGCGCAATTTATTCGGGCTTTCGCTCAATGATCCGCATCGATGCCATCTGGCTGGCCACCGAGCCGATGGACATGCGCGCTGGCACCGAGACAGCATTGGCCCGGGTGATTGCGGTGTTTGGTGCGGCGAAGCCGCACTGCGCTTATCTGTTTGCCAATCGCCGGGCTAACCGAATGAAAGTACTGGTGCACGACGGCGTGGGCGTCTGGCTTGCCGCGCGGCGCCTGAATCAAGGCAAGTTTCACTGGCCCG  >  NC_002947/5033539‑5033835

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.