New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4845173 =	50 (0.440)	6 (0.060)	5/212	NT	14.7%	intergenic (+14/‑123)	PP_4260/PP_4261	hypothetical protein/cation‑transporting P‑type ATPase
	?	NC_002947	4845266 =	26 (0.260)					intergenic (+107/‑30)	PP_4260/PP_4261	hypothetical protein/cation‑transporting P‑type ATPase

TTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGCGGTGG  >  NC_002947/4845118‑4845413                                                                                                                                                     |                                                                                                                                                    ttGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGtt                                                                                                                                                    >  1:2781375/1‑150 (MQ=255)     gTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTCCCt                                                                                                                                                <  2:769463/150‑1 (MQ=255)                                                   cAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGCGGGGCTGATCTGCCTGAGCAGTGTCTGTCCTATGACCCAACCGACCCCCTGCt                                                                                                  >  1:2491281/1‑150 (MQ=255)                                                           tgtgggagcgggcgcgcccgcgaatgcgtcagacctggaaatacctttgcctgagctatcgcattcgcgggcgtgcccgctcccacagggTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTgc                                                                                          >  2:115687‑M2/91‑150 (MQ=255)                                                                  GCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGAcccc                                                                                                       >  2:1730064‑M1/1‑130 (MQ=255)                                                                  GCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGAcccc                                                                                                       >  2:1730495‑M1/1‑130 (MQ=255)                                                                  GCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGAcccc                                                                                                       <  1:1730064‑M1/130‑1 (MQ=255)                                                                  GCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGAcccc                                                                                                       <  1:1730495‑M1/130‑1 (MQ=255)                                                                    gggcgcgcccgcgaatgcgtcagacctggaaatacctttgcctgagctatcgcattcgcgggcgtgcccgctcccacagggGTTCCTATCTGCCTGAGCAGTGTACAGCTTATGACCCAACGGACCTCCTGCTAACACGGCGCCCTGccc                                                                                 >  1:1452109‑M2/82‑150 (MQ=255)                                                                     GGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCg                                                                                <  2:2346813‑M1/150‑1 (MQ=255)                                                                     GGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCg                                                                                <  1:476014‑M1/150‑1 (MQ=255)                                                                       CACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTc                                                                              <  1:2282271‑M1/150‑1 (MQ=255)                                                                            ccgcgaatgcgtcagacctggaaatacctttgcctgagctatcgcattcgcgggcgtgcccgctcccacagggTTTCCTATCTGCCTGAGCAGTGTc                                                                                                                              <  1:3005642‑M2/24‑1 (MQ=255)                                                                            ccgcgaatgcgtcagacctggaaatacctttgcctgagctatcgcattcgcgggcgtgcccgctcccacagggTTTCCTATCTGCCTGAGCAGTGTc                                                                                                                              >  2:3005642‑M2/74‑97 (MQ=255)                                                                            ccgcgaatgcgtcagacctggaaatacctttgcctgagctatcgcattcgcgggcgtgcccgctcccacagggTTTCCTATCTGCCTGAGCAGTGTCTGCCCTa                                                                                                                       >  2:2519436‑M2/74‑104 (MQ=255)                                                                            ccgcgaatgcgtcagacctggaaatacctttgcctgagctatcgcattcgcgggcgtgcccgctcccacagggTTTCCTATCTGCCTGAGCAGTGTCTGCCCTa                                                                                                                       <  1:2519436‑M2/31‑1 (MQ=255)                                                                            ccGCGAATGCGATAGCTTAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCAc                                                                         >  1:2189881/1‑150 (MQ=255)                                                                            ccGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACACCCCTTTACCACTGCGCCCTGCCCGTCCCCAc                                                                         >  1:1541868/1‑150 (MQ=255)                                                                            ccGCGAATGCGATAGATCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCAc                                                                         >  1:891765/1‑150 (MQ=255)                                                                             cgcgAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCAcc                                                                        >  1:2899030/1‑150 (MQ=255)                                                                                          gCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTAc                                                                                                >  2:2996902/1‑113 (MQ=255)                                                                                          gCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTAc                                                                                                <  1:2996902/113‑1 (MQ=255)                                                                                                gCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCAccgccg                                                     >  1:309769/1‑150 (MQ=255)                                                                                                  aaaGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTg                                                   <  2:252130/150‑1 (MQ=255)                                                                                                  aaaGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTg                                                   >  1:252130/1‑150 (MQ=255)                                                                                                  aaaGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTg                                                   >  2:420986/1‑150 (MQ=255)                                                                                                           tCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGc                                          >  1:1338443/1‑150 (MQ=255)                                                                                                                gTCTGACGCATTCGCGGACGCGACCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGcc                                     >  2:1573568/1‑150 (MQ=255)                                                                                                                    gACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTgg                                                  >  2:1215997/1‑133 (MQ=255)                                                                                                                    gACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTgg                                                  <  1:1215997/133‑1 (MQ=255)                                                                                                                     actcATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCt                                                                                                                        <  1:1147547/59‑1 (MQ=255)                                                                                                                     aCGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCt                                                                                                                        >  2:1147547/1‑62 (MQ=255)                                                                                                                     aCGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCt                                                              <  1:1718516/120‑1 (MQ=255)                                                                                                                     aCGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCt                                                              >  2:1718516/1‑120 (MQ=255)                                                                                                                        cATTCGCGGGCGCGCCCTCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGACCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGt                             >  2:419100/1‑150 (MQ=255)                                                                                                                         aTTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGc                                                                                   >  2:1072478/1‑95 (MQ=255)                                                                                                                         aTTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGc                                                                                   <  1:1072478/95‑1 (MQ=255)                                                                                                                         aTTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGtt                            >  1:1786234/1‑150 (MQ=255)                                                                                                                           gagcgGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCACCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTct                          >  1:383972/3‑150 (MQ=255)                                                                                                                            cgcgGTCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTctg                         <  2:476014/150‑1 (MQ=255)                                                                                                                                 gcgcgcCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGcc                    >  2:2484743/1‑150 (MQ=255)                                                                                                                                     gcccgctcccacagggTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCgg                >  1:1280296‑M2/17‑150 (MQ=255)                                                                                                                                       ccgctcccacagggTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCt              >  1:2420860‑M2/15‑150 (MQ=255)                                                                                                                                         gctcccacagggTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGt            <  2:891765‑M2/138‑1 (MQ=255)                                                                                                                                             ccacagggTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGGCGCTTCAccgccg                                                     <  1:722013‑M2/97‑1 (MQ=255)                                                                                                                                             ccacagggTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGGCGCTTCAccgccg                                                     >  2:722013‑M2/9‑105 (MQ=255)                                                                                                                                              cacagggTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGc       >  2:1389881‑M2/8‑150 (MQ=255)                                                                                                                                              cacagggTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGc       >  2:1340666‑M2/8‑150 (MQ=255)                                                                                                                                               acagggTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTAc                                                                                                >  2:2028004‑M2/7‑60 (MQ=255)                                                                                                                                               acagggTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTAc                                                                                                <  1:2028004‑M2/54‑1 (MQ=255)                                                                                                                                                cagggTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGCgg     >  1:1354569‑M2/6‑150 (MQ=255)                                                                                                                                                 agggTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGCGGt    <  1:115687‑M2/146‑1 (MQ=255)                                                                                                                                                  gggTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTGTTCGCCCGTGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGCGGTg   <  2:2282271‑M2/147‑1 (MQ=255)                                                                                                                                                  gggTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGCGGTg   <  1:2484743‑M2/147‑1 (MQ=255)                                                                                                                                                   ggTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGCGGTgg  <  1:1340666‑M2/148‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    TTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGCGGTGG  >  NC_002947/4845118‑4845413

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.