| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5640320 | 32 (0.680) | 6 (0.170) | 6/206 | 3.7 | 21.1% | intergenic (+41/‑69) | PP_4950/PP_4951 | hypothetical protein/EmrB/QacA family drug resistance transporter |
| ? | NC_002947 | = 5640336 | 21 (0.600) | intergenic (+57/‑53) | PP_4950/PP_4951 | hypothetical protein/EmrB/QacA family drug resistance transporter | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
ACAGCTTGCTGGGCAGCCAGCTGGAGGACCTGACCCAGGAGCGCGAGATGATCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5640140‑5640320‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccggccctttcgcggctaaagccgctcctacaGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCAAGTCCAGTCACAATGTCAGGGTCAGGCCTTTGACCAGTGCCCCGGGCAAATGACTCGACCCGGTACTGCGCTGTCCATAAGTACTGGTCGACA < NC_002947/5640336‑5640194 ACAGCTTGCTGGGCAGCCAGCTGGAGGACCTGACCCAGGAGCGCGAGATGATCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGAACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGC < 1:423921/150‑1 TGCTGGGCAGCCAGCTGGAGGACCTGACCCAGGAGCGCGAGATGATCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCC < 1:585917/150‑1 TGGAGGACCTGACCCAGGAGCGCGAGATGATCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGC > 1:540307/1‑150 CCTGACCCAGGAGCGCGAGATGATCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCT < 2:540307/150‑1 GATGATCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCC > 1:378855/1‑150 GACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGG < 2:378855/150‑1 GTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGC < 1:960826/113‑1 GTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGC > 2:960826/1‑113 ACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTA < 2:278638/92‑1 ACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTA > 1:278638/1‑92 TGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGC < 2:360023/51‑1 TGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGC > 1:360023/1‑51 CCCTTTCGGGGCTAAAGCCGCTTCTAGAGGGGTTACGCGTTCTTTGTAGGGGTGGTTTTAGCCGCGAAAGGGCCGGCAAGTCCAGTCACAATGTCAGGGTCAGGCCTTTGACCAGTGCCCCGGGCAAATGACTCGACCCGGTACTGCGCT < 2:173839/150‑1 CCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGTTTTAGCCGCGAAAGGGCCGGCAAGTCCAGTCACAATGTCAGGGTCAGGCCTTTGACCAGTGCCCCGGGCAAATGACTCGACCCGGTACTGCGCT < 2:591682/150‑1 CCCTTTCGCGGCTAAAGCCGATCCTACAGGGGTTACGGGTTCCTTGTAGGAGCGGCTTTGGCCGCGAAAGGGCCGGCAAGTCCAGTCACAATGTCAGGGTCAGGCCTTTGACCAGTGCCCCGGGCAAATGACTCGACCCGGTACTGCGCT < 2:306446/150‑1 gcctGGCTAACGCCGCTCCTACAGGGGTTACGCCGTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCAAGTCCAGTCACAATGTCAGGGTCAGGCCTTTGACCAGTGCCCCGGGCAAATGACTCGACCCGGTACTGCGCTGTCCA < 1:216033/146‑1 GCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCAAGTCCAGTCACAATGTCAGGGTCAGGCCTTTGACCAGTGCCCCGGGCAAATGACTCGACCCGGTACTGCGCTGTCCATA > 1:665218/1‑150 gGGCTAAAGCCGCTCTTACGGGGGTTACGGGTTCTTGGTAGGGGCGGTTTTAGCCGCGAAAGGGCCGGCAAGTCCAGTCACAATGTCAGGGTCAGGCCTTTGACCAGTGCCCCGGGCAAATGACTCGACCCGGTACTGCGCTGTCCATAA < 2:1123444/149‑1 AAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCAAGTCCAGTCACAATGTCAGGGTCAGGCCTTTGACCAGTGCCCCGGGCAAATGACTCGACCCGGTACTGCGCTGTCCATAAGTACTG < 1:679213/150‑1 GCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCAAGTCCAGTCACAATGTCAGGGTCAGGCCTTTGACCAGTGCCCCGGGCAAATGACTCGACCCGGTACTGCGCTGTCCATAAGTACTGGT > 1:1067284/1‑150 GCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCAAGTCCAGT > 1:5855/1‑70 GCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCAAGTCCAGT < 2:5855/70‑1 tcgTACAGGGGTTACGCGTTCCTGGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCAAGTCCAGTCACAATGTCAGGGTCAGGCCTTTGACCAGTGCCCCGGGCAAATGACTCGACCCGGTACTGCGCTGTCCATAAGTACTGGTCGACA < 2:161090/147‑1 ACAGCTTGCTGGGCAGCCAGCTGGAGGACCTGACCCAGGAGCGCGAGATGATCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5640140‑5640320‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccggccctttcgcggctaaagccgctcctacaGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCAAGTCCAGTCACAATGTCAGGGTCAGGCCTTTGACCAGTGCCCCGGGCAAATGACTCGACCCGGTACTGCGCTGTCCATAAGTACTGGTCGACA < NC_002947/5640336‑5640194 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |