New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 564032032 (0.680)6 (0.170) 6/206 3.7 21.1% intergenic (+41/‑69) PP_4950/PP_4951 hypothetical protein/EmrB/QacA family drug resistance transporter
?NC_002947 = 5640336 21 (0.600)intergenic (+57/‑53) PP_4950/PP_4951 hypothetical protein/EmrB/QacA family drug resistance transporter
Rejected: Coverage evenness skew score above cutoff.

TGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAGTCCCTGGACGGCACCATC  >  NC_002947/5640194‑5640484
                                                                                                                                              |                                                                                                                                                    
tGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACCAGGAACGCGTAACCCCTGTACGa                                                                                                                                               >  2:161090/1‑150 (MQ=255)
     aCCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGc                                                                                                                                          <  1:1067284/150‑1 (MQ=255)
       cAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCtt                                                                                                                                        >  1:679213/1‑150 (MQ=255)
             ttATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAACCGCCCCTACCAAGAACCCGTAACCCCCGTAAGAGCGGCTTTAGccc                                                                                                                                  >  2:1123444/1‑149 (MQ=255)
              tATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCcgc                                                                                                                                 <  1:665218/150‑1 (MQ=255)
                tGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGACGGCGTAACCCCTGTAGGAGCGGCGTTAGccaggc                                                                                                                               >  1:216033/1‑146 (MQ=255)
                     aGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAACCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAggg                                                                                                                          >  2:591682/1‑150 (MQ=255)
                     aGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAACCACCCCTACAAAGAACGCGTAACCCCTCTAGAAGCGGCTTTAGCCCCGAAAggg                                                                                                                          >  2:173839/1‑150 (MQ=255)
                     aGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCCAAAGCCGCTCCTACAAGGAACCCGTAACCCCTGTAGGATCGGCTTTAGCCGCGAAAggg                                                                                                                          >  2:306446/1‑150 (MQ=255)
                               cGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGa                                                                                                                <  1:172526/150‑1 (MQ=255)
                                   tCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGCCCCTGACATTGTGACTGGACTTGCCGGCCCTTCCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGCGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACaaa                                                                                                            <  2:285228/150‑1 (MQ=255)
                                      aGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGTAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGa                                                                                                         <  1:173839/150‑1 (MQ=255)
                                                               aaGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCg                                                                                >  2:248914/1‑150 (MQ=255)
                                                               aaGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACCGACCAACGAGGACGTCCTGCCCGCACGCAccccc                                                                                >  2:842007/1‑149 (MQ=255)
                                                                        ccctgacATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGAcccc                                                                       <  1:248914/150‑1 (MQ=255)
                                                                            gacATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAACCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCa                                                                   <  1:842007/150‑1 (MQ=255)
                                                                                     aCTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGc                                                                                                                                          <  1:5855/70‑1 (MQ=255)
                                                                                     aCTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGc                                                                                                                                          >  2:5855/1‑70 (MQ=255)
                                                                                     aCTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCt                                                          <  2:679213/150‑1 (MQ=255)
                                                                                                cGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGa                                                                                                                <  1:126896/85‑1 (MQ=255)
                                                                                                cGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGa                                                                                                                >  2:126896/1‑85 (MQ=255)
                                                                                                 ggCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAGCGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTggg                                              <  1:1123444/150‑1 (MQ=255)
                                                                                                         agcgGCTTTAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGcc                                      >  2:272125/2‑150 (MQ=255)
                                                                                                          gcgGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCa                                     >  1:343727/1‑150 (MQ=255)
                                                                                                            ggCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATc                                   <  1:591682/150‑1 (MQ=255)
                                                                                                              cTAAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGc                                 >  1:392702/1‑150 (MQ=255)
                                                                                                                       cTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCAt                        >  1:812074/1‑150 (MQ=255)
                                                                                                                           tACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAg                    >  1:1110272/1‑150 (MQ=255)
                                                                                                                              aaGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCa                     <  2:58772/146‑1 (MQ=255)
                                                                                                                              aaGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGACGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCa                     >  1:58772/1‑146 (MQ=255)
                                                                                                                                             ccTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAGTCCCTGGACGGCACCATc  >  1:1008940/1‑150 (MQ=255)
                                                                                                                                             ccTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAGTCCCTGGACGGCACCATc  >  1:274194/1‑150 (MQ=255)
                                                                                                                                              |                                                                                                                                                    
TGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAGTCCCTGGACGGCACCATC  >  NC_002947/5640194‑5640484

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.