| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_002947 | 6,098,944 | (CTTCAG)2→1 | coding (196‑201/867 nt) | PP_5350 ← | RpiR family transcriptional regulator |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_002947 | 6098935 | 6098940 | 6 | 27 [0] | [0] 29 | PP_5350 | RpiR family transcriptional regulator |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 6098941 = | 0 (0.000) | 25 (0.570) | 23/256 | 1.1 | 100% | coding (204/867 nt) | PP_5350 | RpiR family transcriptional regulator |
| ? | NC_002947 | = 6098934 | 0 (0.000) | coding (211/867 nt) | PP_5350 | RpiR family transcriptional regulator | |||||
TTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGCCATGGAGCTGTGCATGACGGCAGCCGGGTCGAGCAGCACGTGGTCGGCCA > NC_002947/6098785‑6099083 | ttgttgCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTgcgc < 1:156334/150‑1 (MQ=255) cgcCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCcagcttcag > 1:1042981‑M2/1‑141 (MQ=255) gTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCcagcttcaggtcctggaagcccga > 1:677779‑M2/1‑126 (MQ=255) gTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCcagcttcaggtcctggaagcccga > 1:872657‑M2/1‑126 (MQ=255) cATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCcagcttcaggtcctggaagcccgagcagccaatggcccg > 1:565206‑M2/1‑111 (MQ=255) gggTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCcagcttcaggtcctggaagcccgagcagc < 1:464686‑M2/135‑30 (MQ=255) gggTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCcagcttcaggtcctggaagcccgagcagc > 2:464686‑M2/1‑106 (MQ=255) cAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCcagcttcaggtcctggaagcaccagcagccaatggcccggcagaaacgcac > 1:765842‑M2/1‑99 (MQ=255) gtggtgTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCcagcttcaggtcctggaagcccgagcagccaatggcccggcagaaacgcacgatg > 2:310207‑M2/1‑95 (MQ=255) tAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCcagcttcaggtcctggaagcccgagcagccaatggcccggcagaaacgcacgatggtcggctcactgatacccacgctg < 2:1145351‑M2/150‑80 (MQ=255) tCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCcagcttcaggtcctggaagcccgagcagccaatggcccggcagaaacgcacgatggtcggctcactgatacccacgctgtgc > 2:366223‑M2/1‑68 (MQ=255) ggCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCcagcttcaggtcctggaagcccgagcagccaatggcccggcagaaacgcacgatggtcggctcactgatacccacgctgtgcgc < 1:129250‑M2/150‑85 (MQ=255) aTCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCcagcttcaggtcctggaagcccgagcagccaatggcccggcagaaacgcacgatggtcggctcactgatacccacgctgtgcgccaaatcggc > 1:920139‑M2/1‑57 (MQ=255) aCTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCcagcttcaggtcctggaagcccgagcagccaatggcccggcagaaacgcacgatggtcggctcactgatacccacgctgtgcgccaaatcggccatggagctgtgcatgacgg < 1:491121‑M2/150‑114 (MQ=255) aCAGAAGCTGGCCCAAACAGCCAGGCTTTGCGCcagcttcaggtcctggagtcccgagcagccaatggcccggcagaaacgcacgatggtcggctcactgatacccacgctgtgcgccaaatcggccatggagctgtgcatgacggcagc < 2:601852‑M2/150‑118 (MQ=255) cGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCcagcttcaggtcctggaagcccgagcagccaatggcccggcagaaacgcacgatggtcggctcactgatacccacgctgtgcgccaaatcggccatggagctgtgcatgacggcagccg < 1:707007‑M2/150‑120 (MQ=255) gAAGCTGGCCCCGGCAGCCAGGCTTTGCGCcagcttcaggtcctggaagcccgagcagccaatggcccggcagaaacgcacgatggtcggctcactgatacccacgctgtgcgccaaatcggccatggagctgtgcatgacggcagccgg < 2:703693‑M2/150‑121 (MQ=255) gAAGCTGGCCCCGGCAGCCAGGCTTTGCGCcagcttcaggtcctggaagcccgagcagccaatggcccggcagaaacgcacgatggtcggctcactgatacccacgctgtgcgccaaatcggccatggagctgtgcatgacggcagccgg > 2:707007‑M2/1‑30 (MQ=255) cTGGCCCCGGCAGCCAGGCTTTGCGCcagcttcaggtcctggaagcccgagcagccaatggcccggcagaaacgcacgatggtcggctcactgatacccacgctgtgcgccaaatcggccatggagctgtgcatgacggcagccgggtcg < 2:285859‑M2/150‑125 (MQ=255) tGGCCCCGGCAGCCAGGCTTTGCGCcagcttcaggtcctggaagcccgagcagccaatggcccggcagaaacgcacgatggtcggctcactgatacccacgctgtgcgccaaatcggccatggagctgtgcatgacggcagccgggtcga < 2:727796‑M2/150‑126 (MQ=255) gCCCCGGCAGCCAGGCTTTGCGCcagcttctggtcctggaagcccgagcagccaatggcccggcagaaacgcacgatggtcggctcactgatacccacgctgtgcgccaagtcggccatggagctgtgcatgacggcagccgggtcgagc < 2:665358‑M2/150‑128 (MQ=255) ccGGCAGCCAGGCTTTGCGCcagcttcaggtcctggaagcccgagcagccaatggcccggcagaaacgcacgatggtcggctcactgatacccacgctgtgcgccaaatcggccatggagctgtgcatgacggcagccgggtcgagcagc < 1:885261‑M2/150‑131 (MQ=255) gCCAGGCTTTGCGCcagcttcaggtcctggaagcccgagcagccaatggcccggcagaaacgcacgatggtcggctcactgatacccacgctgtgcgccaaatcggccatggagctgtgcatgacggcagccgggtcgagcagcacgtgg > 2:491121‑M2/1‑14 (MQ=255) cAGGCTTTGCGCcagcttcaggtcctggaagcccgagcagccaatggcccggcagaaacgcacgatggtaggctcactgatacccacgctgtgcgccaaatcggccatggagctgtgcatgacggcagccgggtcgagcagcacgtggtc < 2:1053297‑M2/150‑139 (MQ=255) tttGCGCcagcttcaggtcctggaagcccgagcagccaatggcccggcagaaacgcacgatggtcggctcactgatacccacgctgtgcgccaaatcggccatggagctgtgcatgacggcagccgggtcgagcagcacgtggtcggcca < 1:714211‑M2/150‑144 (MQ=255) tttGCGCcagcttcaggtcctggaagcccgagcagccaatggcccggcagaaacgcacgatggtcggctcactgatacccacgctgtgcgccaaatcggccatggagctgtgcatgacggcagccgggtcgagcagcacgtggtcggcca < 1:307983‑M2/150‑144 (MQ=255) ccagcttcagtgcccggaagctcgagcagccaatggcccggcagaaacgcacgatggtcggctcactgatacccacgctgtgcgccaaatcggccatggagctgtgcatgacggcagccgggtcgagcagcacgtggtcggccactttca > 1:233791‑M2/1‑1 (MQ=255) | TTGTTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGCCATGGAGCTGTGCATGACGGCAGCCGGGTCGAGCAGCACGTGGTCGGCCA > NC_002947/6098785‑6099083 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |