mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 94 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,741,273 | 1 | . | C | 68.2% | 46.5 / 21.7 | 22 | intergenic (+464/+288) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,275 | 0 | A | G | 68.2% | 21.4 / 14.7 | 22 | intergenic (+466/+286) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,299 | 0 | C | T | 60.9% | 10.0 / 20.7 | 23 | intergenic (+490/+262) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,301 | 0 | A | C | 60.9% | 15.8 / 19.6 | 23 | intergenic (+492/+260) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,304 | 0 | C | G | 60.9% | 9.6 / 25.8 | 23 | intergenic (+495/+257) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,305 | 0 | A | C | 60.9% | 37.8 / 32.8 | 23 | intergenic (+496/+256) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 1,327,127 | 0 | C | T | 56.1% | ‑0.1 / 100.8 | 82 | intergenic (+97/‑196) | PP_16SE/PP_23SE | 16S ribosomal RNA/23S ribosomal RNA |
| * | NC_002947 | 1,852,271 | 0 | T | C | 48.0% | 4.5 / 62.7 | 50 | Y439H (TAC→CAC) | relA | ATP:GTP 3'‑pyrophosphotransferase |
| * | NC_002947 | 4,348,749 | 0 | A | G | 45.2% | 26.9 / 68.8 | 62 | intergenic (‑70/+404) | PP_3820/galU | group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase |
| * | NC_002947 | 2,282,822 | 0 | C | A | 41.2% | 40.9 / 52.6 | 51 | intergenic (‑171/+58) | PP_2010/PP_2011 | cytochrome b561/hypothetical protein |
| * | NC_002947 | 1,852,250 | 0 | G | C | 40.4% | 27.4 / 54.8 | 48 | A432P (GCC→CCC) | relA | ATP:GTP 3'‑pyrophosphotransferase |
| * | NC_002947 | 2,282,817 | 0 | G | C | 40.0% | 39.6 / 61.7 | 50 | intergenic (‑166/+63) | PP_2010/PP_2011 | cytochrome b561/hypothetical protein |
| * | NC_002947 | 2,282,818 | 0 | G | C | 40.0% | 43.2 / 61.7 | 50 | intergenic (‑167/+62) | PP_2010/PP_2011 | cytochrome b561/hypothetical protein |
| * | NC_002947 | 2,282,813 | 0 | T | G | 39.3% | 32.1 / 66.1 | 56 | intergenic (‑162/+67) | PP_2010/PP_2011 | cytochrome b561/hypothetical protein |
| * | NC_002947 | 4,741,298 | 1 | . | T | 39.1% | 6.3 / 39.1 | 23 | intergenic (+489/+263) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,302 | 0 | A | G | 39.1% | 11.4 / 20.8 | 23 | intergenic (+493/+259) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 699,725 | 0 | A | G | 35.3% | 44.7 / 39.4 | 51 | intergenic (+115/‑129) | PP_t06/PP_23SD | tRNA‑Ala/23S ribosomal RNA |
| * | NC_002947 | 195,634 | 0 | C | T | 33.3% | 72.5 / 57.4 | 69 | T380T (ACC→ACT) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 196,351 | 0 | C | G | 32.9% | 129.7 / 83.4 | 86 | T619T (ACC→ACG) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 4,741,274 | 0 | A | C | 31.8% | 19.3 / 15.5 | 22 | intergenic (+465/+287) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| Marginal new junction evidence (lowest skew 10 of 359 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1013201 = | 63 (1.500) | 9 (0.280) | 11/206 | 2.0 | 17.5% | intergenic (+26/+105) | prfC/potF‑I | peptide chain release factor 3/putrescine‑binding protein |
| ? | NC_002947 | 1013289 = | 36 (1.110) | intergenic (+114/+17) | prfC/potF‑I | peptide chain release factor 3/putrescine‑binding protein | |||||
| * | ? | NC_002947 | = 5513315 | 53 (1.260) | 10 (0.300) | 9/214 | 2.6 | 18.1% | intergenic (+45/‑109) | urtD/urtE | ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein |
| ? | NC_002947 | = 5513371 | 48 (1.420) | intergenic (+101/‑53) | urtD/urtE | ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein | |||||
| * | ? | NC_002947 | = 2429960 | 32 (0.760) | 7 (0.220) | 7/200 | 2.9 | 19.7% | intergenic (+47/+66) | PP_2129/PP_2130 | hypothetical protein/lytic transglycosylase |
| ? | NC_002947 | = 2429975 | 33 (1.040) | intergenic (+62/+51) | PP_2129/PP_2130 | hypothetical protein/lytic transglycosylase | |||||
| * | ? | NC_002947 | 2295818 = | 58 (1.380) | 8 (0.230) | 8/218 | 2.9 | 16.1% | intergenic (+21/+112) | PP_5496/PP_2023 | hypothetical protein/glutathione S‑transferase family protein |
| ? | NC_002947 | 2295903 = | 36 (1.050) | intergenic (+106/+27) | PP_5496/PP_2023 | hypothetical protein/glutathione S‑transferase family protein | |||||
| * | ? | NC_002947 | = 6019326 | 65 (1.550) | 9 (0.260) | 8/220 | 3.0 | 14.0% | intergenic (‑71/+74) | dadX/dadA‑II | alanine racemase/D‑amino acid:quinone oxidoreductase |
| ? | NC_002947 | = 6019356 | 57 (1.640) | intergenic (‑101/+44) | dadX/dadA‑II | alanine racemase/D‑amino acid:quinone oxidoreductase | |||||
| * | ? | NC_002947 | 2472145 = | 45 (1.070) | 7 (0.240) | 6/188 | 3.1 | 16.7% | intergenic (+6/+143) | PP_2166/PP_2167 | anti‑anti‑sigma factor/PhoD‑like phosphatase |
| ? | NC_002947 | 2472269 = | 38 (1.280) | intergenic (+130/+19) | PP_2166/PP_2167 | anti‑anti‑sigma factor/PhoD‑like phosphatase | |||||
| * | ? | NC_002947 | 413997 = | 64 (1.520) | 7 (0.210) | 7/210 | 3.1 | 12.7% | intergenic (+14/‑189) | glnE/waaF | glutamate‑ammonia‑ligase adenylyltransferase/ADP‑heptose:LPS heptosyltransferase II |
| ? | NC_002947 | 414083 = | 46 (1.390) | intergenic (+100/‑103) | glnE/waaF | glutamate‑ammonia‑ligase adenylyltransferase/ADP‑heptose:LPS heptosyltransferase II | |||||
| * | ? | NC_002947 | 1156328 = | 34 (0.810) | 9 (0.260) | 7/216 | 3.2 | 21.3% | intergenic (+25/‑191) | PP_1013/yihS | sensor histidine kinase/aldose‑ketose isomerase |
| ? | NC_002947 | 1156401 = | 39 (1.140) | intergenic (+98/‑118) | PP_1013/yihS | sensor histidine kinase/aldose‑ketose isomerase | |||||
| * | ? | NC_002947 | = 295713 | 64 (1.520) | 8 (0.210) | 8/238 | 3.2 | 11.9% | intergenic (+60/+82) | PP_0241/PP_0242 | transporter/TetR family transcriptional regulator |
| ? | NC_002947 | = 295744 | 61 (1.620) | intergenic (+91/+51) | PP_0241/PP_0242 | transporter/TetR family transcriptional regulator | |||||
| * | ? | NC_002947 | = 4781051 | 53 (1.260) | 8 (0.210) | 8/246 | 3.3 | 14.3% | coding (6308/7887 nt) | pvdJ | non‑ribosomal peptide synthetase |
| ? | NC_002947 | = 4781068 | 47 (1.210) | coding (6291/7887 nt) | pvdJ | non‑ribosomal peptide synthetase | |||||