New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 413995	53 (0.890)	7 (0.120)	7/232	NT	11.9%	intergenic (+12/‑191)	glnE/waaF	glutamate‑ammonia‑ligase adenylyltransferase/ADP‑heptose:LPS heptosyltransferase II
	?	NC_002947	= 414083	52 (0.900)					intergenic (+100/‑103)	glnE/waaF	glutamate‑ammonia‑ligase adenylyltransferase/ADP‑heptose:LPS heptosyltransferase II

TTGCGTGAAGTGTACAAAGCGTTCCGCTCGGCCTCCCACCGCCAGGCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/413843‑413995 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcCTATTCGCGGGCAAGCCCGCTCCCACAGGGATTGCACACTGCTCAGGGCCTGTGCAGTACCTGTGGGAGCGGGCTTGCCCGCGAATAAGCCAACACGGTATCAGCTTAAACCCAACTCACCCCAGATCCGCCGCACTTCACGGCGTTC  <  NC_002947/414083‑413936                                                                                                                                                                                                                                                                                                               TTGCGTGAAGTGTACAAAGCGTTCCGCTCGGCCTCCCACCGCCAGGCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTT                                                                                                                                                         >  1:488922/1‑150   GCGTGAAGTGTACAAAGCGTTCCGCTCGGCCTCCCACCGCCAGGCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGG                                                                                                                                                       <  2:259126/150‑1   GCGTGAAGTGTACAAAGCGTTCCGCTCGGCCTCCCACCGCCAGGCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGG                                                                                                                                                       <  2:469828/150‑1                                  TCCCACCGCCAGGCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCCTATTCGCGGGCAAGCCCGCTCCCACAGGG                                                                                                                        >  2:1565259/1‑150                                                                      ATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGGATTGCACACTGCTCAGGGCCTGTGCAGTACCTGT                                                                                      <  1:606704/148‑1                                                                      ATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGGATTGCACACTGCTCAGGGCCTGTGCAGTACCTGT                                                                                      >  2:606704/1‑148                                                                        CGATGCGGCACAGTTTGCCGATAAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCCTATTCGCGGGCAAGCCCGCTCCCACAGGGATTGCACACTGCTCAGGGCCTGTGCAGTACCTGTGGGA                                                                                  <  1:1565259/150‑1                                                                            GCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGGATTGCACACTGCTCAGGGCCTGTGCAGTACCTGTGGGAGCGG                                                                              <  2:1187113/150‑1                                                                                                                              GTTGGGTTTAAGCTGATACCGTGTTGGCCTATTCGCGGGCAAGCCCGCTCCCACAGGGATTGCACACTGCTCAGGGCCTGTGCAGTACCTGTGG                                                                                    <  1:37653/94‑1                                                                                                                              GTTGGGTTTAAGCTGATACCGTGTTGGCCTATTCGCGGGCAAGCCCGCTCCCACAGGGATTGCACACTGCTCAGGGCCTGTGCAGTACCTGTGG                                                                                    >  2:37653/1‑94                                                                                                                                                        GCCTATTCGCGGGCAAGCCCGCTCCCACAGGGATTGCACACTGCTGAGGGCCTGTGCAGTCCCCGTGTGAGCGTGCTTGCCCGCGAATAAGGCAACACGGTATCCGCTTACACCCAACTCACCCCAGATCCGCCGCACTTCACGGCGTTC  >  2:551961/1‑150                                                                                                                                                         CCTATTCGCGGGCAAGCCCGCTCCCACAGGGATTGCACACTGCTCAGGGCCTGTGCAGTACCTGTGGGAGCGGGC                                                                            >  1:274739/1‑75                                                                                                                                                         CCTATTCGCGGGCAAGCCCGCTCCCACAGGGATTGCACACTGCTCAGGGCCTGTGCAGTACCTGTGGGAGCGGGC                                                                            <  2:274739/75‑1                                                                                                                                                                                                                                                                                                               TTGCGTGAAGTGTACAAAGCGTTCCGCTCGGCCTCCCACCGCCAGGCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/413843‑413995 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcCTATTCGCGGGCAAGCCCGCTCCCACAGGGATTGCACACTGCTCAGGGCCTGTGCAGTACCTGTGGGAGCGGGCTTGCCCGCGAATAAGCCAACACGGTATCAGCTTAAACCCAACTCACCCCAGATCCGCCGCACTTCACGGCGTTC  <  NC_002947/414083‑413936

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.