New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 413995	53 (0.890)	7 (0.120)	7/232	NT	11.9%	intergenic (+12/‑191)	glnE/waaF	glutamate‑ammonia‑ligase adenylyltransferase/ADP‑heptose:LPS heptosyltransferase II
	?	NC_002947	= 414083	52 (0.900)					intergenic (+100/‑103)	glnE/waaF	glutamate‑ammonia‑ligase adenylyltransferase/ADP‑heptose:LPS heptosyltransferase II

TACAAAGCGTTCCGCTCGGCCTCCCACCGCCAGGCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTG  >  NC_002947/413855‑414144                                                                                                                                             |                                                                                                                                                      tACAAAGCGTTCCGCTCGGCCTCCCACCGCCAGGCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTcgcg                                                                                                                                              <  1:994141/150‑1 (MQ=255)   cAAAGCGTTCCGCTCGGCCTCCCACCGCCAGGCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCggg                                                                                                                                            >  2:966811/1‑150 (MQ=255)    aaaGCGTTCCGCTCGGCCTCCCACCGCCAGGCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGc                                                                                                                                           >  1:1187113/1‑150 (MQ=255)        cGTTCCGCTCGGCCTCCCACCGCCAGGCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGc                                                                                                                                       <  2:1416994/150‑1 (MQ=255)             cGCTCGGCCTCCCACCGCCAGGCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCt                                                                                                                                  <  2:1631378/150‑1 (MQ=255)                   gCCTCCCACCGCCAGGCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCcaca                                                                                                                            <  1:807735/150‑1 (MQ=255)                   gCCTCCCACCGCCAGGCCCCGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCcaca                                                                                                                            >  1:1640347/1‑150 (MQ=255)                      tCCCACCGCCAGGCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCctattcgcgggcaagcccgctcccacaggg                                                                                                                         >  2:1565259‑M1/1‑120 (MQ=255)                      tCCCACCGCCAGGCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCaa                                                                                                                                         >  1:153570/1‑134 (MQ=255)                      tCCCACCGCCAGGCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCaa                                                                                                                                         <  2:153570/134‑1 (MQ=255)                       cccACCGCCAGGCCCTGCAGAAGGAGGCCGGGGTGCTCGCTGCGCCACATGTTGCCGATGAACGCCGTGAAGTACGTCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTa                                                                                                                        <  1:365117/150‑1 (MQ=255)                         cACCGCCAGGCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCcaca                                                                                                                            >  1:871163/1‑144 (MQ=255)                         cACCGCCAGGCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCcaca                                                                                                                            <  2:871163/144‑1 (MQ=255)                            cGCCAGGCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTCTTCGCGGGCACGCCCGCTCACCCCGGTACTGca                                                                                                                   <  2:22154/150‑1 (MQ=255)                              ccAGGCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGcaca                                                                                                                 <  2:303482/150‑1 (MQ=255)                                  gCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGAGGATCTGGGGTGAGGTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCGAGCCCCCACAGGTACTGCACAGGcc                                                                                                             >  1:197192/1‑150 (MQ=255)                                    ccTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGc                                                                                                                                       <  2:819595/122‑1 (MQ=255)                                    ccTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGc                                                                                                                                       >  1:819595/1‑122 (MQ=255)                                        cAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCACACAGGTACTGCACAGGCTCTGAGc                                                                                                       >  1:1478479/1‑150 (MQ=255)                                           aaGGAGGCCGGGGTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAgt                                                                                                    >  2:1097460/1‑150 (MQ=255)                                                  ccGGGGTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAgg                                                                                                                          <  2:879448/121‑1 (MQ=255)                                                  ccGGGGTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAgg                                                                                                                          >  1:879448/1‑121 (MQ=255)                                                     gggTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATccc                                                                                          <  2:1081826/150‑1 (MQ=255)                                                        tgctCGCTGCGGCACAGTTTGGCGATGGACGCGGTGCAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTTATACCGTGTTGGCTTATTCGCGGGCGAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATGCCtgt                                                                                       <  2:262970/147‑1 (MQ=255)                                                          aTCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCttattcgcgggcaagcccgctcccacagggattgcacactgctcagggcctgtgcagtacctgt                                                                                       <  1:606704‑M1/148‑65 (MQ=255)                                                          aTCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCttattcgcgggcaagcccgctcccacagggattgcacactgctcagggcctgtgcagtacctgt                                                                                       >  2:606704‑M1/1‑84 (MQ=255)                                                            cGATGCGGCACAGTTTGCCGATAAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCctattcgcgggcaagcccgctcccacagggattgcacactgctcagggcctgtgcagtacctgtggga                                                                                   <  1:1565259‑M1/150‑69 (MQ=255)                                                                gCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCttattcgcgggcaagcccgctcccacagggattgcacactgctcagggcctgtgcagtacctgtgggagcgg                                                                               <  2:1187113‑M1/150‑73 (MQ=255)                                                                  ggCACAGTTTGCCGATGAACGCGGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATccc                                                                                          <  1:648983/137‑1 (MQ=255)                                                                  ggCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATccc                                                                                          >  2:648983/1‑137 (MQ=255)                                                                     acaGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGGGTGCAATCCCGGTGGGAGCGGGCTTg                                                                          >  1:343865/1‑150 (MQ=255)                                                                      caGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGc                                                                         <  1:718366/150‑1 (MQ=255)                                                                       aGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAg                                                                                                                           >  1:94141/1‑99 (MQ=255)                                                                       aGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAg                                                                                                                           <  2:94141/99‑1 (MQ=255)                                                                        gtgtGCCGATGAACGCCGTGGAGTGCGGCTGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGTGAGCGGGCTTGccc                                                                       <  2:197192/147‑1 (MQ=255)                                                                           tGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGCACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCcgcg                                                                    <  2:1640347/150‑1 (MQ=255)                                                                              cGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGccc                                                                                                                                     >  1:1117331/1‑82 (MQ=255)                                                                              cGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGccc                                                                                                                                     <  2:1117331/82‑1 (MQ=255)                                                                              cGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATcc                                                                                           >  1:504747/1‑124 (MQ=255)                                                                              cGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATcc                                                                                           <  2:504747/124‑1 (MQ=255)                                                                                  gAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTGTAAGCGGATACCGTGTTGCCTTATTCGCGGGCAAGCACGCTCACACGGGGACTGCACAGGCCCTCAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGgc                                                             >  2:551961‑M2/1‑148 (MQ=255)                                                                                      gCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCAtg                                                         <  1:1097460/150‑1 (MQ=255)                                                                                                  ggcggATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGa                                                                                   >  2:1156450/1‑112 (MQ=255)                                                                                                  ggcggATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGa                                                                                   <  1:1156450/112‑1 (MQ=255)                                                                                                      gATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTc                                         <  1:3118/150‑1 (MQ=255)                                                                                                            gggTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAg                                                                                  >  1:1620341/1‑103 (MQ=255)                                                                                                            gggTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAg                                                                                  <  2:1620341/103‑1 (MQ=255)                                                                                                            gggTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTaca                                              >  2:1241608/1‑139 (MQ=255)                                                                                                            gggTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTaca                                              <  1:1241608/139‑1 (MQ=255)                                                                                                              gTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTgg                                                                                     <  2:785523/98‑1 (MQ=255)                                                                                                              gTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTgg                                                                                     >  1:785523/1‑98 (MQ=255)                                                                                                              gTGAGTGGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGGGTGGTACACTGTCCGCcacct                                 >  1:494149/1‑148 (MQ=255)                                                                                                                  gTTGGGTTTAAGCTGATACCGTGTTGGCctattcgcgggcaagcccgctcccacagggattgcacactgctcagggcctgtgcagtacctgtgg                                                                                     <  1:37653‑M1/94‑67 (MQ=255)                                                                                                                  gTTGGGTTTAAGCTGATACCGTGTTGGCctattcgcgggcaagcccgctcccacagggattgcacactgctcagggcctgtgcagtacctgtgg                                                                                     >  2:37653‑M1/1‑28 (MQ=255)                                                                                                                       gTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAat                        <  1:966811/150‑1 (MQ=255)                                                                                                                             gCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATa                                                                <  2:1585249/104‑1 (MQ=255)                                                                                                                             gCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATa                                                                >  1:1585249/1‑104 (MQ=255)                                                                                                                                 aTACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGa                                                                                   <  1:1204407/81‑1 (MQ=255)                                                                                                                                 aTACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGa                                                                                   >  2:1204407/1‑81 (MQ=255)                                                                                                                                      gtgtTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCtg                                                                                        >  1:1004291/1‑71 (MQ=255)                                                                                                                                      gtgtTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCtg                                                                                        <  2:1004291/71‑1 (MQ=255)                                                                                                                                         ttGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAg      <  1:316917/150‑1 (MQ=255)                                                                                                                                            gCctattcgcgggcaagcccgctcccacagggattgcacactgctgagggcctgtgcagtccccgtgtgagcgtgcttgcccgcgaataaggcaacacggtatccgcttacacccaactcaccccagatccgccgcacttcacggcgttc   >  2:551961‑M1/1‑2 (MQ=255)                                                                                                                                             cctattcgcgggcaagcccgctcccacagggattgcacactgctcagggcctgtgcagtacctgtgggagcgggc                                                                             >  1:274739‑M1/1‑1 (MQ=255)                                                                                                                                             cctattcgcgggcaagcccgctcccacagggattgcacactgctcagggcctgtgcagtacctgtgggagcgggc                                                                             <  2:274739‑M1/75‑75 (MQ=255)                                                                                                                                             cTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTg  >  2:943870/1‑150 (MQ=255)                                                                                                                                             |                                                                                                                                                      TACAAAGCGTTCCGCTCGGCCTCCCACCGCCAGGCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTGCCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTG  >  NC_002947/413855‑414144

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.