New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 63417444 (0.730)6 (0.110) 6/218 NT 11.9% coding (477/2016 nt) PP_0546 sigma‑54 dependent transcriptional regulator
?NC_002947 = 634185 49 (0.900)coding (488/2016 nt) PP_0546 sigma‑54 dependent transcriptional regulator

CCCCGCCGAGCGGCGCAGCTTCGAGCGTGCCGGGCTGTGGCTGGGCGCTGACTGGAGCGAGGCGCGCGAGGGCACCAATGGCATCGGCACATGTCTGGTCGAGCGCCAGGCGCTGACCATCCATCAGAACGAGCACTTCCGTGGCCGTCACACCGGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/634015‑634174
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acaccgggctgGCCGAGCAGGTCAGCCCGGTGTGACGGCCACGGAAGTGCTCGTTCTGATGGATGGTCAGCGCCTGGCGCTCGACCAGACATGTGCCGATGCCATTGGTGCCCTCGCGCGCCTCGCTCCAGTCAGCGCCCAGCCACAGCCCGG  <  NC_002947/634185‑634044
                                                                                                                                                                                                                                                                                                              
CCCCGCCGAGCGGCGCAGCTTCGAGCGTGCCGGGCTGTGGATGGGCGCTGACTGGAGCGAGGCGCGCGAGGGCACCAATGGCATCGGCACATGTCTGGTCGAGCGCCAGGCGCTGACCATCCATCAGAACGAGCACTTCCGTGGCCGTCA                                                                                                                                                          >  1:1566056/1‑150
 CCCGCCGAGCGGCGCAGCTTCGAGCGTGCCGGGCTGTGGCTGGGCGCTGACTGGAGCGAGGCGCGCGAGGGCACCAATGGCATCGGCACATGTCTGGTCGAGCGCCAGGCGCTGACCATCCATCAGAACGAGCACTTCCGTGGCCGTCAC                                                                                                                                                         >  1:797057/1‑150
 CCCGCCGAGCGGCGCAGCTTCGAGCGTGCCGGGCTGTGGCTGGGCGCTGACTGGAGCGAGGCGCGCGAGGGCACCAATGGCATCGGCACATGTCTGGTCGAGCGCCAGGCGCTGACCATCCATCAGAACGAGCACTTCCGTGGCCGTCAC                                                                                                                                                         >  1:459728/1‑150
  CCGCCGAGCGGCGCAGCTTCGAGCGTGCCGGGCTGTGGCTGGGCGCTGACTGGAGCGAGGCGCGCGAGGGCACCAATGGCATCGGCACATGTCTGGTCGAGCGCCAGGCGCTGACCATCCATCAGAACGAGCACTTCCGTGGCCGTCACA                                                                                                                                                        >  1:645165/1‑150
               CAGCTTCGAGCGTGCCGGGCTGTGGCTGGGCGCTGACTGGAGCGAGGCGCGCGAGGGCACCAATGGCATCGGCACATGTCTGGTCGAGCGCCAGGCGCTGACCATCCATCAGAACGAGCACTTCCGTGGCCGTCACACCGGGCTGGCCGA                                                                                                                                           >  2:978178/1‑150
                 GCTTCGAGCGTGCCGGGCTGTGGCTGGGCGCTGACTGGAGCGAGGCGCGCGAGGGCACCAATGGCATCGGCACATGTCTGGTCGAGCGCCAGGCGCTGACCATCCATCAGAACGAGCACTTCCGTGGCCGTCACACCGGGCTGGCCGAGC                                                                                                                                         <  1:1347713/150‑1
                            GCCGGGCTGTGGCTGGGCGCTGACTGGAGCGAGGCGCGCGAGGGCACCAATGGCATCGGCACATGTCTGGTCGAGCGCCAGGCGCTGACCATCCATCAGAACGAGCACTTCCGTGGCCGTCACA                                                                                                                                                        <  1:369543/124‑1
                            GCCGGGCTGTGGCTGGGCGCTGACTGGAGCGAGGCGCGCGAGGGCACCAATGGCATCGGCACATGTCTGGTCGAGCGCCAGGCGCTGACCATCCATCAGAACGAGCACTTCCGTGGCCGTCACA                                                                                                                                                        >  2:369543/1‑124
                             CCGGGCTGTGGCTGGGCGCTGACTGGAGCGAGGCGCGCGAGGGCACCAATGGCATCGGCACATGTCTGGTCGAGCGCCAGGCGCTGACCATCCATCAGAACGAGCACTTCCGTGGCCGTCACACCGGGCTGGCCGAGCAGGTCAGCCCGG                                                                                                                             <  1:978178/150‑1
                                                                                                    GAGCGCCAGGCGCTGACCATCCATCAGAACGAGCACTTCCGTGGCCGTCACACCGGGCTGGCCGAGCAGGTCAGCCCGGT                                                                                                                            <  1:593273/80‑1
                                                                                                    GAGCGCCAGGCGCTGACCATCCATCAGAACGAGCACTTCCGTGGCCGTCACACCGGGCTGGCCGAGCAGGTCAGCCCGGT                                                                                                                            >  2:593273/1‑80
                                                                                                          CAGGCGCTGACCATCCATCAGAACGAGCACTTCCGTGGCCGTCACACCGGGCTGGCCGAGCAGGTCAGCCCGGTG                                                                                                                           >  2:1222810/1‑75
                                                                                                          CAGGCGCTGACCATCCATCAGAACGAGCACTTCCGTGGCCGTCACACCGGGCTGGCCGAGCAGGTCAGCCCGGTG                                                                                                                           <  1:1222810/75‑1
                                                                                                                                                       ACCGGGCTGGCCGAGCAGGTCAGCCCGGTGTGACGGCCACGGAAGTGCTCGTTCTGATGGATGGTCAGCGCCTGGCGCTCGACCAGACATCAGCCGATGCCATTGGTGCCCTCGCGCGCCTCGCTCCAGTCAGCGCCCAGCCACAGCCCG   >  2:1176315/1‑150
                                                                                                                                                       ACCGGGCTGGCCGAGAAGGTCAGCCCGGTGTGACAGCCAGGGAAGTGCTCGTTCTGATGGATGGTCAGCGCCTGGCGCTCGACCAGACATGTGCCGATGCCATTGGTGCCCTCGCGCGCCTCGCTCCAGTCAGCGCCCAGCCACAGCCCG   >  2:401983/1‑150
                                                                                                                                                       ACCGGGCTGGACGCGCCGGTCAGCCCGGTGTGACGGCCACGGAAGTGCTCGTTCTGATGGAAGGTCAGCGCCTGGCGCTCGACCAGACATGTGCCGATGCCATTGGTGCCCTCGCGCGCCTCGCTCCAGTCAGCGCCCAGCCACAGCCCG   >  2:645165/1‑150
                                                                                                                                                        CCGGGCTGGCCGAGCAGGTCAGCCCGGTGTGACGGCCACGGAAGTGCTCGTTCTGATGGATGGTCAGCGCCTGGCGCTCGACCAGACATGTGCCGATGCCATTGGTGCCCTCGCGCGCCTCGCTCCAGTCAGCGCCCAGCCACAGCCCGG  >  1:907685/1‑150
                                                                                                                                                                                                                                                                                                              
CCCCGCCGAGCGGCGCAGCTTCGAGCGTGCCGGGCTGTGGCTGGGCGCTGACTGGAGCGAGGCGCGCGAGGGCACCAATGGCATCGGCACATGTCTGGTCGAGCGCCAGGCGCTGACCATCCATCAGAACGAGCACTTCCGTGGCCGTCACACCGGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/634015‑634174
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acaccgggctgGCCGAGCAGGTCAGCCCGGTGTGACGGCCACGGAAGTGCTCGTTCTGATGGATGGTCAGCGCCTGGCGCTCGACCAGACATGTGCCGATGCCATTGGTGCCCTCGCGCGCCTCGCTCCAGTCAGCGCCCAGCCACAGCCCGG  <  NC_002947/634185‑634044

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.