New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 1196277 | 61 (1.020) | 5 (0.090) | 5/232 | NT | 7.7% | coding (332/1755 nt) | xcpQ | type II secretion pathway protein XcpQ |
? | NC_002947 | = 1196306 | 61 (1.050) | coding (361/1755 nt) | xcpQ | type II secretion pathway protein XcpQ |
CCCGGGTCAAGGGCAAGGTCACCGTGCGCACCGTCGACCTGCACGACGCCGACGCCATCTACGACATCTTCCTGGCCCAACTGCGCGCCCAGGGCTATGCCACCGTCGACCTGCCCAACGGCAGCGTGAAAATCGTGCCCGACCAGGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1196127‑1196277 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcCCGCCTCCACTGGCACCGGCTCCAGGCGCGCGGCCTGGTCGGGCACGATTTTCACGCTGCCGTTGGGCAGGTCGACGGTGGCATAGCCCTGGGCGCGCAGTTGGGCCAGGAAGATGTCGTAGATGGCGTCGGCGTCGTGCAGGTCGACG < NC_002947/1196306‑1196158 CCCGGGTCAAGGGCAAGGTCACCGTGCGCACCGTCGACCTGCACGACGCCGACGCCATCTACGACATCTTCCTGGCCCAACTGCGCGCCCAGGGCTATGCCACCGTCGACCTGCCCAACGGCAGCGTGAAAATCGTGCCCGACCAGGCCG > 2:984947/1‑150 CCGGGTCAAGGGCAAGGTCACCGTGCGCACCGTCGACCTGCACGACGCCGACGCCATCTACGACATCTTCCTGGCCCAACTGCGCGCCCAGGGCTATGCCACCGTCGACCTGCCCAACGGCAGCGTGAAAATCGTGCCCGACCAGGCCGC > 2:1559195/1‑150 CGACGCCGACGCCATCTACGACATCTGCCTGGCCCAACTGCGCGCCCAGGGCTATGCCACCGTCGACCTGCCCAACGGCAGCGTGAAAATCGTGCCCGACCAGGCCGCCCGCCTCCACTGGCACCGGCTCCAGGCGCGCGGCCTGGTCGG < 1:1390819/150‑1 CGACATCTTCCTGGCCCAACTGCGCGCCCAGGGCTATGCCACCGTCGACCTGCCCAACGGCAGCGTGAAAATCGTGCCCGACCAGGCCGCCCGCCTCCACTGGCACCGGCTCCAGGCGCGCGGCCT < 1:1408483/126‑1 CGACATCTTCCTGGCCCAACTGCGCGCCCAGGGCTATGCCACCGTCGACCTGCCCAACGGCAGCGTGAAAATCGTGCCCGACCAGGCCGCCCGCCTCCACTGGCACCGGCTCCAGGCGCGCGGCCT > 2:1408483/1‑126 CACCGTCGACCTGCCCAACGGCAGCGTGAAAATCGTGCCCGACCAGGCCGCCCGCCTCCACTGGCACCGGCTCCAGGCGCGCGGCCTGG < 1:462350/89‑1 CACCGTCGACCTGCCCAACGGCAGCGTGAAAATCGTGCCCGACCAGGCCGCCCGCCTCCACTGGCACCGGCTCCAGGCGCGCGGCCTGG > 2:462350/1‑89 ctgaCCGCCCGCCTCCACTGGCACCGGCTCCAGGCGCGCGGCCTGGTCGGGCACGATTTTCACGCTGCCGTTGGGCAGGTCGACGGTGGCATAGCCCTGGGCGCGCAGTTGGGCCAGGAAGATGTCGTAGATGGCGTCGGTGTCGTGCAG > 2:359442/5‑150 CCGCCCGCCTCCACTGGCACCGGCTCCAGGCGCGCGGCCTGGTCGGGCACGATTTTCACGCTGCCGTTGGGCAGGTCGACGGTGGCATAGCCCTGGGCGCGCAGTTGGGCCAGGAAGATGTCGTAGATGGCGTCGGCGTCGTGCAGGTCG > 1:382857/1‑150 CCCGCCTCCACTGGCACCGGCTCCAGGCGCGCGGCCTGGTCGGGCACGATTTTCACGCTGCCGTTGGGCAGGTCGACGGTGGCATAGCCCTGGGCGCGCAGTTGGGCCAGGAAGATGTCGTAGATGGCGTCGGCGTCGTGCAGGTCGACG < 1:1490601/150‑1 CCCGGGTCAAGGGCAAGGTCACCGTGCGCACCGTCGACCTGCACGACGCCGACGCCATCTACGACATCTTCCTGGCCCAACTGCGCGCCCAGGGCTATGCCACCGTCGACCTGCCCAACGGCAGCGTGAAAATCGTGCCCGACCAGGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1196127‑1196277 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcCCGCCTCCACTGGCACCGGCTCCAGGCGCGCGGCCTGGTCGGGCACGATTTTCACGCTGCCGTTGGGCAGGTCGACGGTGGCATAGCCCTGGGCGCGCAGTTGGGCCAGGAAGATGTCGTAGATGGCGTCGGCGTCGTGCAGGTCGACG < NC_002947/1196306‑1196158 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |