New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1285024	63 (1.050)	7 (0.120)	6/238	NT	10.0%	coding (249/795 nt)	PP_1122	OmpA family protein
	?	NC_002947	= 1285063	63 (1.060)					coding (288/795 nt)	PP_1122	OmpA family protein

TTGCCGCTGTTGGTGGCTGCCAGCCTGCTCACGGGCTGCGCTACGCACAGCGATGGCAGCGCGCCCCTCAATCAAAGGACCTGGCCCATCTGCAGCCTGCTGGGCGGCTTGGTCGGTGGTGGCCTTGGTGCCATCGAGAGTTCTTCCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1284875‑1285024 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gCCCGCCGGCAATGGCGCCCAAGGCGCCACCACCGGCGGCCCAGGAAGAACTCTCGATGGCACCAAGGCCACCACCGACCAAGCCGCCCAGCAGGCTGCAGATGGGCCAGGTCCTTTGATTGAGGGGCGCGCTGCCATCGCTGTGCGTAG  <  NC_002947/1285063‑1284915                                                                                                                                                                                                                                                                                                             TTGCCGCTGTTGGTGGCTGCCAGCCTGCTCACGGGCTGCTCTACGCACAGCGATGGCAGCGCGCCCCTCAATCAAAGGACCTGGCCCATCTGCAGCCTGCTGGGCGGCTTGGTCGGTGGTGGCCTTGGTGCCATCGAGAGTTCTTCCTGG                                                                                                                                                       <  1:473226/150‑1     CGCTGTTGGTGGCTGCCAGCCTGCTCACGGCCTGCGCTACGCACAGCGATGGCGAATCGCCCCTCAATCAAAGCACCTGGCCCATCGGCAGCCTGCTGGGCGGCTTGGTCGGTGGTGGCCTTGGTGCCATCGAGAGTTCTTCCTGGggcg                                                                                                                                                   >  1:1021535/1‑146             GTGGCTGCCAGCCTGCTCACGGGCTGCGCTACGCACAGCGATGGCAGCGCGCCCCTCAATCAAAGGACCTGGCCCATCTGCAGCCTGCTGGGCGGCTTGGTCGGTGGTGGCCGTGGTGCCCTCGAGAGTTCTTCCTGGCCCGCCGGgggt                                                                                                                                           >  2:772256/1‑146                                     TGCGCTACGCACAGCGATGGCAGCGCGCCCCTCAATCAAAGGACCTGGCCCATCTGCAGCCTGCTGGGCGGCTTGGTCGGTGGTGGCCTTGGTGCCATCGAGAGTTCTTCCTGGCCCGCCGGCAATGGCGCCCAAGGCGCCACCACCGGC                                                                                                                   >  1:508634/1‑150                                         CTACGCACAGCGATGGCAGCGCGCCCCTCAATCAAAGGACCTGGCCCATCTGCAGCCTGCTGGGCGGCTTGGTCGGTGGTGGCCTTGGTGCCATCGAGAGTTCTTCCTGGCCCGCCGGCAATGGCGCCCAAGGCGCCACCACCGGCGGCC                                                                                                               <  2:508634/150‑1                                                                                  TGGCCCATCTGCAGCCTGCTGGGCGGCTTGGTCGGTGGTGGCCTTGGTGCCATCGAGAGTTCTTCCTGGGCCGCCGGCAATGGCGCCCAAGGCGCCACCACCGGCGGCCCAGGAA                                                                                                         <  1:486867/115‑1                                                                                  TGGCCCATCTGCAGCCTGCTGGGCGGCTTGGTCGGTGGTGGCCTTGGTGCCATCGAGAGTTCTTCCTGGGCCGCCGGCAATGGCGCCCAAGGCGCCACCACCGGCGGCCCAGGAA                                                                                                         >  2:486867/1‑115                                                                                                                                GTGCCATCGAGAGTTCTTCCTGGCCCGCCGACAATGGCGCCCAAGGCGCCACCACCGGCGGCCCAGGAA                                                                                                         >  1:1643540/1‑69                                                                                                                                GTGCCATCGAGAGTTCTTCCTGGCCCGCCGACAATGGCGCCCAAGGCGCCACCACCGGCGGCCCAGGAA                                                                                                         <  2:1643540/69‑1                                                                                                                                                      GCCCGCCGGCAATGGCGCCCAAGGCGCCACCACCGGCGGCCCAGGAAGAACTCTCGATGGCACCAAGGCCACCACCGACCAAGCCGCCCAGCAGGCTGCAGATGGGCCAGGTCCTTTGATTGAGGGGCGCGCTGCCATCGCTGTGCGTAG  <  2:1397712/150‑1                                                                                                                                                                                                                                                                                                             TTGCCGCTGTTGGTGGCTGCCAGCCTGCTCACGGGCTGCGCTACGCACAGCGATGGCAGCGCGCCCCTCAATCAAAGGACCTGGCCCATCTGCAGCCTGCTGGGCGGCTTGGTCGGTGGTGGCCTTGGTGCCATCGAGAGTTCTTCCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1284875‑1285024 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gCCCGCCGGCAATGGCGCCCAAGGCGCCACCACCGGCGGCCCAGGAAGAACTCTCGATGGCACCAAGGCCACCACCGACCAAGCCGCCCAGCAGGCTGCAGATGGGCCAGGTCCTTTGATTGAGGGGCGCGCTGCCATCGCTGTGCGTAG  <  NC_002947/1285063‑1284915

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.