| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1747750 | 107 (1.790) | 8 (0.150) | 5/220 | NT | 7.2% | intergenic (‑200/+331) | PP_5473/PP_5474 | LuxR family transcriptional regulator/hypothetical protein |
| ? | NC_002947 | = 1747789 | 108 (1.970) | intergenic (‑239/+292) | PP_5473/PP_5474 | LuxR family transcriptional regulator/hypothetical protein | |||||
CGAAGCTTCTTGCGATTTCTTTGGTGGTAAGTCCTCGAGCAACCTCGAGAAGGCATTGCAATTCGCGAGGCGCCAGGCCTCGGCCGAGGTGGCCTATCCATGCGCCGATAGTGATCGTGTCCATTTTTGATCTCGGTGTGGGCTGCATTGGTCGTGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1747592‑1747750‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtcgtgacgTTCGCCCTCCCCTTGGTCCGGGAGGTAGACGGCAGCGAGCGTCACGACCAATGCAGCCCACACCGAGATCAAAAATGGACACGATCACTATCGGCGCATGGATAGGCCACCTCGGCCGAGGCCTGGCGCCTCGCGAATTGCAAT < NC_002947/1747789‑1747646 cggAGCTTCTTGCGATTTCTTTGGTGGGAAGTCCTCGAGCAACCTCGAGAAGGCATTGCAATTCGCGAGGCGCCAGGCCTCGGACGAGGTGGCCTATCCATGCGCCGATAGTGATCGTGTCCATTTTTGAACGCGGTGGGTGCTGCATTG < 2:482941/147‑1CGAAGCTTCTTGCGATTTCTTTGGTGGTAAGTCCTCGAGCAACCTCGAGAAGGCATTGCAATTCGCGAGGCGCCAGGCCTCGGCCGAGGTGGCCTATCCATGCGCCGATAGTGATCGTGTCCATTTTTGATCTCGGTGTGGGCTGCATTG < 2:852901/150‑1CGAAGCTTCTTGCGATTTCTTTGGTGGTAAGTCCTCGAGCAACCTCGAGAAGGCATTGCAATTCGCGAGGCGCCAGGCCTCGGCCGAGGTGGCCTATCCATGCGCCGATAGTGATCGTGTCCATTTTTGATCTCGGTGTGGGCTGCATTG < 1:1395314/150‑1CGAAGCTTCTTGCGATTTCTTTGGTGGTAAGTCCTCGAGCAACCTCGAGAAGGCATTGCAATTCGCGAGGCGCCAGGCCTCGGCCGAGGTGGCCTATCCATGCGCCGATAGTGATCGTGTCCATTTTTGATCTCGGTGTGGGCTGCATTG > 2:1522122/1‑150CGAAGCTTCTTGCGATTTCTTTGGTGGTAAGTCCTCGAGCAACCTCGAGAAGGCATTGCAATTCGCGAGGCGCCAGGCCTCGGCCGAGGTGGCCTATCCATGCGCCGATAGTGATCGTGTCCATTTTTGATCTCGGTGTGGGCTGCATTG > 2:1325726/1‑150 CTTGCGATTTCTTTGGTGGTAAGTCCTCGAGCAACCTCGAGAAGGCATTGCAATTCGCGAGGCGCCAGGCCTCGGCCGAGGTGGCCTATCCATGCGCCGATAGTGATCGTGTCCATTTTTGATCTCGGTGTGGGCTGCATTGGTCGTGAC < 1:1352210/150‑1 GATTTCTTTGGTGGTAAGTCCTCGAGCAACCTCGAGAAGGCATTGCAATTCGCGAGGCGCCAGGCCTCGGCCGAGGTGGCCTATCCATGCGCCGATAGTGATCGTGTCCATTTTTGATCTCGGTGTGGGCTGCATTGTTCCTGCCGcccg > 2:1326500/1‑146 TCGAGAAGGCATTGCAATTCGCGAGGCGCCAGGCCTCGGCCGAGGTGGCCTATCCATGCGCCGATAGTGATCGTGTCCATTTTTGATCTCGGTGTGGGCTGCATTGGTCGTGACGTTCGCCCTCCCCTTGGTCCGGGAGGTAGACGGCAG > 1:1470862/1‑150 TCGAGAAGGCATTGCAATTCGCGAGGCGCCAGGCCTCGGCCGAGGTGGCCTATCCATGCGCCGATAGTGATCGTGTCCATTTTTGATCTCGGTGTGGGCTGCATTGGTC < 1:523282/109‑1 TCGAGAAGGCATTGCAATTCGCGAGGCGCCAGGCCTCGGCCGAGGTGGCCTATCCATGCGCCGATAGTGATCGTGTCCATTTTTGATCTCGGTGTGGGCTGCATTGGTC > 2:523282/1‑109 TCGAGAAGGCATTGCAATTCGCGAGGCGCCAGGCCTCGGCCGAGGTGGCCTATCCATGCGCCGATAGTGATCGTGTCCATTTTTGATCTCGGTGTGGGCTGCATCGGTCGTGACGTTCGCCCTCCCCTTGGTCCGGGAGGTAGAC > 1:1638225/1‑145 TCGAGAAGGCATTGCAATTCGCGAGGCGCCAGGCCTCGGCCGAGGTGGCCTATCCATGCGCCGATAGTGATCGTGTCCATTTTTGATCTCGGTGTGGGCTGCATCGGTCGTGACGTTCGCCCTCCCCTTGGTCCGGGAGGTAGAC < 2:1638225/145‑1 TGCAATTCGCGAGGCGCCAGGCCTCGGCCGAGGTGGCCTATCCATGCGCCGATAGTGATCGTGTCCATTTTTGATCTCGGTGTGGGCTGCATTGGTCGTGACGTTCGCCCTCCCCTTGGTCCGGGAGGTAGACGGCAGCGAGCGTCACGA < 1:1489746/150‑1 TGCAATTCGCGAGGCGCCAGGCCTCGGCCGAGGTGGCCTATCCATGCGCCGATAGTGATCGTGTCCATTTTTGATCTCGGTGTGGACTGCATCGGTCGTGACGTTCGCCCTCCCCTTGGTCCGGGAGGTAGACGGCAGCGAGCGTCACGA < 2:1645939/150‑1 AGGCGCCAGGCCTCGGCCGAGGTGGCCTATCCATGCGCCGATAGTGATCGTGTCCATTTTTGATCTCGGTGTGGGCTGCATTGGTCGTGACGTTCGCCCTCCCCTTGGTCCGGGAGGTAGACGGCAGCGAGCGTCACGACCAATGCAGCC < 2:1470862/150‑1 CAGGCCTCGGCCGAGGTGGCCTATCCATGCGCCGATAGTGATCGTGTCCATTTTTGATCTCGGTGTGGGCTGCATTG < 1:234976/77‑1 CAGGCCTCGGCCGAGGTGGCCTATCCATGCGCCGATAGTGATCGTGTCCATTTTTGATCTCGGTGTGGGCTGCATTG > 2:234976/1‑77 CTATCCATGCGCCGATAGTGATCGTGTCCATTTTTGATCTCGGTGTGGGCTGCATTGGTCGTGACGTTCGCCCTCCCCTTGGTCCGGGAGGTAGACGGCAGCGAGCGTCACGA < 2:120003/113‑1 CTATCCATGCGCCGATAGTGATCGTGTCCATTTTTGATCTCGGTGTGGGCTGCATTGGTCGTGACGTTCGCCCTCCCCTTGGTCCGGGAGGTAGACGGCAGCGAGCGTCACGA > 1:120003/1‑113 GTCGTGACGTTCGCCCTCCCCTTGGTCCGGGAGGTAGACGGCAGCGAGCGTCACGACCAATGCAGCCCACACCGAGATCAAAAATGGACACGATCACTATCGGCGCATGGATAGGCCACCTCGGCCGAGGCCTGGCGCCTCGCGAATTGC > 2:1633513/1‑150 TCGTGACGTTCGCCCTCCCCTTGGTCCGGGAGGTAGACGGCAGCGAGCGTCACGACCAATGCAGCCCACACCGAGATCAAAAATGGACACGATCACTATCGGCGCATGGATAG > 1:1092255/1‑113 TCGTGACGTTCGCCCTCCCCTTGGTCCGGGAGGTAGACGGCAGCGAGCGTCACGACCAATGCAGCCCACACCGAGATCAAAAATGGACACGATCACTATCGGCGCATGGATAG < 2:1092255/113‑1 CGTGACGTTCGCCCTCCCCTTGGTCCGGGAGGTAGACGGCAGCGAGCGTCACGACCAATGCAGCCCACACCGAGATCAAAAATGGACACGATCACTATCGGCGCATGGATAGGCCACCTCGGCCGAGGCCTGGCGCCTCGCGAATTGCAA < 2:1609888/150‑1 GTGACGTTCGCCCTGCCCTTGGGCCGGGCGGTAGCCGGCAGCGAGCGTCACGACCAATGCAGCCCACACCGAGAGCAAAACTGGACACGATCACTATAGGCCCATGGATAGGCCACCTCGGCCGAGGCCTGGCGCCTCGCGAATTGCAAT < 1:674491/150‑1 GTGACGTTCGCCCTCCCCTTGGTCCGGGAGGTAGACGGCAGCGAGCGTCACGACCAATGCAGCCCACACCGAGATCAAAAATGGACACGATCACTATCGGCGCATGGATAGGCCACCTCGGCCGAGGCCTGGCGCCTCGCGAATTGCAAT > 1:1528605/1‑150 CGAAGCTTCTTGCGATTTCTTTGGTGGTAAGTCCTCGAGCAACCTCGAGAAGGCATTGCAATTCGCGAGGCGCCAGGCCTCGGCCGAGGTGGCCTATCCATGCGCCGATAGTGATCGTGTCCATTTTTGATCTCGGTGTGGGCTGCATTGGTCGTGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1747592‑1747750‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtcgtgacgTTCGCCCTCCCCTTGGTCCGGGAGGTAGACGGCAGCGAGCGTCACGACCAATGCAGCCCACACCGAGATCAAAAATGGACACGATCACTATCGGCGCATGGATAGGCCACCTCGGCCGAGGCCTGGCGCCTCGCGAATTGCAAT < NC_002947/1747789‑1747646 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |