New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1899282	79 (1.320)	4 (0.090) +AAACGTTACTGATTGCACTGTCCCTGTG	3/184	NT	7.4%	intergenic (+310/‑210)	PP_t18/PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
	?	NC_002947	2749651 =	51 (0.850)					intergenic (+81/+33)	PP_2405/PP_2406	hypothetical protein/quinate/shikimate dehydrogenase

CAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1899241‑1899282 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGGCGTGCCCGCGAAGAAGCCAACACTTTTCTATCAGGTGAAACTGGCAAAGTGCGCCTGCATCCGCGCCGCATCCGCCTGCCGC  >  NC_002947/2749651‑2749735                                           ||||||||||||||||||||||||||||                                                                                      ttggctTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCAAACGTTACTGATTGCACTGTCCCTGTGGGGCATGCCCGCGAAGAGGCCAACACTTTTCTATCAGGTGAAACTGGCAAAGTGCGCCTGCATCCGCGCCGCATCCGCCT       >  1:896264/7‑150      tTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCAAACGTTACTGATTGCACTGTCCCTGTGGGGCATGCCCGCGAAGAGGCCAACACTTTTCTATCAGGTGAAACTGGCAAAGTGCGCCTGCATCCGCGCCGCATCCGCCTTCCGC  <  2:896264/149‑1            GCGGGCACGCCCGCTCCCACAGGTACTGCGCAAACGTTACTGATTGCACTGTCCCTGTGGGGCATGCCCGCGAAGAAGCCAACACTTTT                                                         <  1:1114211/89‑1            GCGGGCACGCCCGCTCCCACAGGTACTGCGCAAACGTTACTGATTGCACTGTCCCTGTGGGGCATGCCCGCGAAGAAGCCAACACTTTT                                                         >  2:1114211/1‑89              GGGCACGCCCGCTCCCACAGGTACTGCGCAAACGTTACTGATTGCACTGTCCCTGTGG                                                                                      >  2:1435296/1‑58                GCACGCCCGCTCCCACAGGTACTGCGCAAACGTTAC                                                                                                          >  1:218536/1‑36                GCACGCCCGCTCCCACAGGTACTGCGCAAACGTTAC                                                                                                          <  2:218536/36‑1                                           ||||||||||||||||||||||||||||                                                                                      CAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1899241‑1899282 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGGCGTGCCCGCGAAGAAGCCAACACTTTTCTATCAGGTGAAACTGGCAAAGTGCGCCTGCATCCGCGCCGCATCCGCCTGCCGC  >  NC_002947/2749651‑2749735

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.