| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2078299 | 63 (1.050) | 7 (0.140) | 6/206 | NT | 11.6% | intergenic (+41/+74) | PP_1853/PP_1854 | LysR family transcriptional regulator/hypothetical protein |
| ? | NC_002947 | = 2078346 | 53 (1.030) | intergenic (+88/+27) | PP_1853/PP_1854 | LysR family transcriptional regulator/hypothetical protein | |||||
TTTCGCCGAGCACAAGCTGTTGCCGGGCAAGACCCGGGCGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2078144‑2078299‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggcccgcccgcTCCCACAAGGACCCCACTGTCTTCAGGGCTGTGATATCCCTGTGGGTGCGGGCGGGCCCGCGAAAAGGCCGGCACAGGCAATAATTCTCTAAAGGGCCTGCAGGGCATCGAACCGCCCCGCCAGCCCCTGCTCGGCAAACTGC < NC_002947/2078346‑2078204 TTTCGCCGAGCACAAGCTGTTGCCGGGCAAGACCCGGGCGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCC > 1:1239959/1‑150 TCGCCGAGCACAAGCTGTTGCCGGGCAAGACCCGGGCGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGC > 1:1043064/1‑150 GCCGAGCACAAGCTGTTGACGGGCAAGACCCGGGCGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGGCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGGCGGCCTTTTCGCGGGGCCGCCC > 1:782357/1‑150 ATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGTCTGAACCGGCCTCTTCGCGGGCCCGCCCGCTCCCACAAGGACCCCACTGTCTTCAGGGCTGTGATAT > 2:622598/1‑150 AGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGTCTGAACCGGCCTCTTCGCGGGCCCGCCCGCTCCCACAAGGACCCCACTGTCTTCAGGGCTGTGATATCCCTGTGGGTGCGGGC < 1:622598/150‑1 AGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCTCCCACAAGGACCCCACTGTCTTCAGGGCTGTGATATCCCTGTGGGTGCGGGC < 1:1177181/150‑1 GTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCG < 2:857386/92‑1 GTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCG > 1:857386/1‑92 TTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTACCGGCCTCTTCGCGGGCCCGCCCGCTCCCACAAGGACCCCACTGTCTTCAGGGCTGTGATATCCCTGTGGGTGCGGGCGGGCC < 1:942033/150‑1 GATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCTCCCACAAGGACCCCACTGTCTTCAGGGCTGTGATATCCCTGTGGGTGCGGGCGG < 2:762338/117‑1 GATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCTCCCACAAGGACCCCACTGTCTTAAGGGCTGTGATATCCCTGTGGGTGCGGGCGG > 1:762338/1‑117 caCCGGCCTTTTCGCGGGCCCGCCCGCTCCCACAAGGTCCCCTCTTTCTTCAGGTCTTTGATATCCCTGTGGGTGTGGGCGGGCCCGCGAAAAGGCCGGCACAGGCAATAATTCTCTAAAGGGCCTGCAGGGCATCGAACCGCCCCGCCA < 1:93324/148‑1 TTCGCGGGCCCGCCCGCTCCCACAAGGACCCCACTGTCTTCAGGGCTGTGATATCAACACGGGTGCGGGCGGGCCCGCGAAAAGGCCGGCACAGGCAATAATTCTCTAAAGGGCCTGCAGGGCATCGAACCGCCCCGCCAGCCCCTGCTC > 2:1043064/1‑150 gCGCGGGCCCGCCCGCTCCCACAAGGACCCCACTGTCTTCAGGGCTGTGATATCCCGGTGGGTGCGGGCGGGCCCGCGAAAAGGCCGGCACAGGCAATAATTCTCTAAAGGGCCTGCAGGGCATCGAACCGCCCCGCCAGCCCCTGCTCG < 2:1605766/149‑1 ccgtGCCCGCCCGTCCCCACAAGGACCCCACTGTCTTCAGGGCTGTGATACCCCTGTGGGTGCGGGCGGGCCCGCGAAAAGGCCGGCACAGGCAATAATTCTCTAAAGGGCCTGCAGGGCATCGAACCGCCCCGCCAGCCCCTGCTCGGC < 2:347985/146‑1 GCGGGCCCGCCCGCTCCCACAAGGACCCCACTGTCTTCAGGGCTGTGATATCCCT < 1:19091/55‑1 GCGGGCCCGCCCGCTCCCACAAGGACCCCACTGTCTTCAGGGCTGTGATATCCCT > 2:19091/1‑55 GGCCCGCCCTCTCCCACAAGGACCCCATTGTCTTCAGCGTTGTGCTCTTCCGTTGGGTGTTGGCGGGCCCGCGAAAAGGCCGGCACAGGCAATAATTCTCTAAAGGGCCTGCAGGGCATCGAACCGCCCCGCCAGCCCCTGCTCGGCAAA < 1:556233/150‑1 CCCGCCCGCTCCCACAAGGACCCCACTGTCTTCAGGGCTGTGATATCCCTGTGGGTGCGGGCGGGCCCGCGAAAAGGCCGGCACAGGCAATAATTCTCTAAAGGGCCTGCAGGGCATCGAACCGCCCCGCCAGCCCCTGCTCG > 2:1384191/1‑143 CCCGCCCGCTCCCACAAGGACCCCACTGTCTTCAGGGCTGTGATATCCCTGTGGGTGCGGGCGGGCCCGCGAAAAGGCCGGCACAGGCAATAATTCTCTAAAGGGCCTGCAGGGCATCGAACCGCCCCGCCAGCCCCTGCTCG < 1:1384191/143‑1 CCCGCCCGCTCCCACAAGGACCCCACTGTCTTCAGGGCTGTGATATCCCTGTGGGTGCGGGCGGGCCCGCGAAAAGGCCGGCACAGGCAATAATTCTCTA < 2:1139900/100‑1 CCCGCCCGCTCCCACAAGGACCCCACTGTCTTCAGGGCTGTGATATCCCTGTGGGTGCGGGCGGGCCCGCGAAAAGGCCGGCACAGGCAATAATTCTCTA > 1:1139900/1‑100 CCGCCCGCTCCCACAAGGACCCCACTGTCTTCAGGGCTGTGATATCCCTGTGGGTGCGGGCGGGCCCGCGAAAAGGCCGGCACAGGCAATAATTCTCTAAAGGGCCTGCAGGGCATCGAACCGCCCCGCCAGCCCCTGCTCGGCAAACTG > 2:1239959/1‑150 CCGCCCGCTCCCACAAGGACCCCACTGTCTTCAGGGCTGTGATATCCCTGTGGGTGCGGGCGGGCCCGCGAAAAGGCCGGCACAGGCAATAATTCTCTAAAGGGCCTGCAGGGCATCGAACCGCCCCGCCAGCCCCTGCTCGGCAAACTG > 1:1497769/1‑150 CGCCCGCTCCCACAAGGACCCCACTGTCCCCAGACGACGCTTTTCCGTGGGGGTGCGGGCGGGCCCGCGAAAAGGCCGGCACAGGCAATAATTCTCTAAAGGGCCTGCAGGGCATCGAACCGCCCCGCCAGCCCCTGCTCGGCAAACTGC < 2:543726/150‑1 TTTCGCCGAGCACAAGCTGTTGCCGGGCAAGACCCGGGCGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2078144‑2078299‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggcccgcccgcTCCCACAAGGACCCCACTGTCTTCAGGGCTGTGATATCCCTGTGGGTGCGGGCGGGCCCGCGAAAAGGCCGGCACAGGCAATAATTCTCTAAAGGGCCTGCAGGGCATCGAACCGCCCCGCCAGCCCCTGCTCGGCAAACTGC < NC_002947/2078346‑2078204 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |