New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2832716 =	59 (0.990)	5 (0.090)	5/226	NT	8.2%	intergenic (‑21/+46)	PP_2485/PP_2486	hypothetical protein/Oye family NADH‑dependent flavin oxidoreductase
	?	NC_002947	2832764 =	57 (1.010)					coding (1123/1125 nt)	PP_2486	Oye family NADH‑dependent flavin oxidoreductase

CCCGCTCGTATCGCCAACAACTGGCCGCTTAACCCAGTTGATCCAAGCAGCATGTACGGCGGTACCGATAAGGGCTACACCGACTACCCGACTTACAAATCCTAAACGCTCAATGCCACGCCCCATAACTCAGGGGCGTGGC‑‑TCAGCGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2832866‑2832716 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcgtttAGGATTTGTAAGTCGGGTAGTCGGTGTAGCCCTTATCGGTACCGCCGTACATGCTGCTTGGATCAACTGGGTTAAGCGGCCAGTTGTTGGCGATACGAGCGGGCAGGTCGGGGTTCGCAATGAAGGGGCGACCAAAAGCGATCAGGTC  >  NC_002947/2832764‑2832911                                                                                                                                                                                                                                                                                                               CCCGCTCGTATCGCCAACAAGTGGCCGCTTAACCCAGTTGATCCAAGCAGCATGTACGGCGGTACCGATAAGGGCTACACCGACTACCCGACTTACAAATCCTAAACGCTCAATGCCACGCCCCATAACTCAGGGGCGTGGC‑‑TCAGCGTT                                                                                                                                                       >  2:1589136/1‑150  CCGCTCGTATCGCCAACAACTGGCCGCTTAACCCAGTTGATCCAAGCAGCATGTACGGCGGTACCGATAAGGGCTACACCGACTACCCGACTTACAAATCCTAAACGCTCAATGCCACGCCCCATAACTCAGGGGCGTGGC‑‑TCAGCGTTT                                                                                                                                                      >  1:222778/1‑150              CCAACAACTGGCCGCTTAACCCAGTTGATCCAAGCAGCATGTACGGCGGTACCGATAAGGGCTACACCGACTACCCGACTTACAAATCCTAAACGCTCAACGCCACGCCCCATAACTCAGGGGCGTGGC‑‑TCAGCG                                                                                                                                                         >  1:942183/1‑135              CCAACAACTGGCCGCTTAACCCAGTTGATCCAAGCAGCATGTACGGCGGTACCGATAAGGGCTACACCGACTACCCGACTTACAAATCCTAAACGCTCAACGCCACGCCCCATAACTCAGGGGCGTGGC‑‑TCAGCG                                                                                                                                                         <  2:942183/135‑1                                                                                 CGACTACCCGACTTACAAATCCTAAACGCTCAATGCCACGCCCCATAACTCAGGGGCGTGGC‑‑TCAGCGTTT                                                                                                                                                      >  1:1281132/1‑71                                                                                 CGACTACCCGACTTACAAATCCTAAACGCTCAATGCCACGCCCCATAACTCAGGGGCGTGGC‑‑TCAGCGTTT                                                                                                                                                      <  2:1281132/71‑1                                                                                              TACAAATCCTAAACGCTCAATGCCACGCCCCATAACTCAGGGGCGTGGC‑‑TCAGCGTATAGGATTTGTAAGTCGGATAGTCGGTGTAGCCCTTATCGGTACCGCCGTACATGCTGCTTGGATCAACTGGGTTAAGCGGCCAGTTGTTGGCG                                                          >  2:574421/1‑150                                                                                               ACAAATCCTAAACGCTCAATGCCACGCCCCATAACTCAGGGGCGTGGC‑‑TCAGCGTTTAGGATTTGTAAGTCGGGTAGTCGGTGTAGCCCTTATCGGTACCGCCGTACATGCTGCTTGGATCAACTGGGTTAAGCGGCCAGTTGTTGGCGA                                                         >  1:1044903/1‑150                                                                                                CAAATCCTAAACGCTCAATGCCACGCCCCATAACTCAGGGGCGTGGC‑‑TCAGCGTTTAGGATTTGTAAGTCGGGTAGTCGGTGTAGCCCTTATCGGTACCGCCGTACATGCTGCTTGGATCAACTGGGTTAAGCGGCCAGTTGTTGGCGAT                                                        <  2:1044903/150‑1                                                                                                       TAAACGCTCAATGCCACGCCCCATAACTCAGGGGCGTGGCATTGAGCGTTTAGGATTTGTAAGTCGGGTAGTCGGTGTAGCCCTTATCGGTACCGCCGTACATGCTGCTTGGATCAACTGGGTTAAGCGGCCAGTTGTTGGCGATACGAG                                                   >  2:697104/1‑150                                                                                                                AATGCCACGCCCCATAACTCAGGGGCGTGGC‑‑TCAGCGTTT                                                                                                                                                      <  1:1352387/40‑1                                                                                                                AATGCCACGCCCCATAACTCAGGGGCGTGGC‑‑TCAGCGTTT                                                                                                                                                      >  2:1352387/1‑40                                                                                                                    CCACGCCCCATAACTCAGGGGCGTGGCATTGAGCGTTTAGGATTTGTAAGTCGGGTAGTCGGTGTAGCCCTTATCGGTACCGCCGTACATGCTGCTTGGATCAACTGGGTTAAGCGGCCAGTTGTTGGCGATACGAGCGGGCAGGTCGGG                                      <  1:697104/150‑1                                                                                                                                                       TTTAGGATTTGTAAGTCGGGTAGTCGGTGTAGCCCTTATCGGTACCGCC                                                                                                        >  1:32916/1‑49                                                                                                                                                       TTTAGGATTTGTAAGTCGGGTAGTCGGTGTAGCCCTTATCGGTACCGCC                                                                                                        <  2:32916/49‑1                                                                                                                                                        TTAGGATTTGTAAGTCGGGTAGTCGGTGTAGCCCTTATCGGTACCGCCGTACATGCTGCTTGGATCAACTGGGTTAAGCGGCCAGTTGTTGGCGATACGAGCGGGCAGGTCGGGGTTCGCAATGAAGGGGCGACCAAAAGCGATCAGGTC  >  1:1629765/1‑150                                                                                                                                                                                                                                                                                                               CCCGCTCGTATCGCCAACAACTGGCCGCTTAACCCAGTTGATCCAAGCAGCATGTACGGCGGTACCGATAAGGGCTACACCGACTACCCGACTTACAAATCCTAAACGCTCAATGCCACGCCCCATAACTCAGGGGCGTGGC‑‑TCAGCGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2832866‑2832716 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcgtttAGGATTTGTAAGTCGGGTAGTCGGTGTAGCCCTTATCGGTACCGCCGTACATGCTGCTTGGATCAACTGGGTTAAGCGGCCAGTTGTTGGCGATACGAGCGGGCAGGTCGGGGTTCGCAATGAAGGGGCGACCAAAAGCGATCAGGTC  >  NC_002947/2832764‑2832911

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.