| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3003037 = | 54 (0.900) | 6 (0.110) | 6/228 | NT | 10.7% | coding (1035/1464 nt) | PP_2626 | hypothetical protein |
| ? | NC_002947 | 3003077 = | 49 (0.860) | coding (1075/1464 nt) | PP_2626 | hypothetical protein | |||||
CATGCCGTCGCTGAAGCACAGCTGCTGCAGCGAGGGCATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3003076‑3003037‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcatgGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCAAGGTGCAACCCCCCAGGAGTTCAGCGGCCTGCGCGAGGAGCTTGTCAGCCAGCTGGAAACCGGTGGCATAGAGCCGCTGCTCCTTCGGC > NC_002947/3003077‑3003224 CATGCCGTCGCTGAAGCACAGCTGCTGCAGCGAGGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCA > 1:1284329/1‑80CATGCCGTCGCTGAAGCACAGCTGCTGCAGCGAGGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCA < 2:1284329/80‑1 CGTCGCTGAAGCACAGCTGCTGCAGCGAGGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCC < 1:113449/85‑1 CGTCGCTGAAGCACAGCTGCTGCAGCGAGGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCC > 2:113449/1‑85 CTGAAGCACAGCTGCTGCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCAAGGTGCAACCCCCCAGGAGTTCAGCG > 1:291575/1‑115 CTGAAGCACAGCTGCTGCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCAAGGTGCAACCCCCCAGGAGTTCAGCG < 2:291575/115‑1 TGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCAAGGTGCAACCCCCCAGGAGTTCAGCGGCCTGCGCGAGGAGCTTGTCAGCCAGCTGGAAACCGGTGGCATAGAGCCGCTGCTCCTTCGGC > 2:1248190/1‑150 CATGCCGTCGCTGAAGCACAGCTGCTGCAGCGAGGGCATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3003076‑3003037‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcatgGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCAAGGTGCAACCCCCCAGGAGTTCAGCGGCCTGCGCGAGGAGCTTGTCAGCCAGCTGGAAACCGGTGGCATAGAGCCGCTGCTCCTTCGGC > NC_002947/3003077‑3003224 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |