New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3003037 =	54 (0.900)	6 (0.110)	6/228	NT	10.7%	coding (1035/1464 nt)	PP_2626	hypothetical protein
	?	NC_002947	3003077 =	49 (0.860)					coding (1075/1464 nt)	PP_2626	hypothetical protein

CCGCCTTGCTGCAGCGTATTGAAAAGAGCCTGACGGCTTGCCCCTTCTGGATTCGTGGCAGCTTTCTGGCTGCGACCGTCGCCACACAGCTGGCGATGTGCGAGGTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCAAGGTGCAACCCCCCAGGAGTTCAGCGGCCTGCGCGAGGAGCTTG  >  NC_002947/3002889‑3003179                                                                                                                                                     |                                                                                                                                               gccgaaggagcagcggctctatgccaccggtttccagctggctgacaagctcctcgcgcaggccgctgaactcctggggggttgcaccttggccagacggcccttgggtgcccttgagccaggccaggcactggtcgtcgacaaatacCa                                                                                                                                               >  2:1248190‑M1/149‑150 (MQ=255)     cTTGCTGCAGCGTATTGAAAAGAGCCTGACGGCTTGCCCCTTCTGGATTCGTGGCAGCTTTCTGGCTGCGACCGTCGCCACACAGCTGGCGATGTGCGAGGTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGcc                                                                                                                                           <  2:599834/150‑1 (MQ=255)          tgcAGCGTATTGAAAAGAGCCTGACGGCTTGCCCCTTCTGGATTCGTGGCAGCTTTCTGGCTGCGACCGTCGCCACACAGCTGGCGATGTGCGAGGTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGc                                                                                                                                      >  2:902/1‑150 (MQ=255)                   ttGAAAAGAGCCTGACGGCTTGCCCCTTCTGGATTCGTGGCAGCTTTCTGGCTGCGACCGTCGCCACACAGCTGGCGATGTGCGAGGTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCagcagc                                                                                                                             <  2:640558/150‑1 (MQ=255)                     gAAAAGAGCCTGACGGCTTGCCCCTTCTGGATTCGTGGCAGCTTTCTGGCTGCGACCGTCGCCACACAGCTGGCGATGTGCGAGGTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCtg                                                                                                                           >  2:906262/1‑150 (MQ=255)                      aaaaGAGCCTGACGGCTTGCCCCTTCTGGATTCGTGGCAGCTTTCTGGCTGCGACCGTCGCCACACAGCTGGCGATGTGCGAGGTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCtgt                                                                                                                          >  2:686601/1‑150 (MQ=255)                          gagCCTGACGGCTTGCCCCTTCTGGATTCGTGGCAGCTTTCTGGCTGCGACCGTCGCCACACAGCTGGCGATGTGCGAGGTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCtt                                                                                                                      <  1:906262/150‑1 (MQ=255)                                      ttGCCCCTTCTGGATTCGTGGCAGCTTTCTGGCTGCGACCGTCGCCACACAGCTGGCGATGTGCGAGGTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCAt                                                                                                          >  1:189574/1‑150 (MQ=255)                                          cccTTCTGGATTCGTGGCAGCTTTCTGGCTGCGACCGTCGCCACACAGCTGGCGATGTGCGAGGTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACATCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTa                                                                                                      >  1:768984/1‑150 (MQ=255)                                           ccTTCTGGATTCGTGGCAGCTTTCTGGCTGCGACCGTCGCCACACAGCTGGCGATGTGCGAGGTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACATCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTAt                                                                                                     <  2:768984/150‑1 (MQ=255)                                           ccTTCTGGATTCGTGGCAGCTTTCTGGCTGCGACCGTCGCCACACAGCTGGCGATGTGCGAGGTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTAt                                                                                                     >  1:383740/1‑150 (MQ=255)                                                tGGATTCGTGGCAGCTTTCTGGCTGCGATCGTCGCCACACAGCTGGCGATGTGCGAGGTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTc                                                                                                >  2:1525703/1‑150 (MQ=255)                                                tGGATTCGTGGCAGCTTTCTGGCTGCGACCGTCGCCACACAGCTGGCGATGTGCGAGGTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTc                                                                                                >  2:599121/1‑150 (MQ=255)                                                    ttCGTGGCAGCTTTCTGGCTGCGACCGTCGCCACACAGCTGGCGATGTGCGAGGTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTcgacg                                                                                            >  1:403837/1‑150 (MQ=255)                                                        tGGCAGCTTTCTGGCTGCGACCGTCGCCACACAGCTGGCGATGTGCGAGGTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCa                                                                                        >  2:1630213/1‑150 (MQ=255)                                                          gCAGCTTTCTGGCTGCGACCGTCGCCACACAGCTGGCGATGTGCGAGGTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGt                                                                                      >  2:1071024/1‑150 (MQ=255)                                                                cgctgaactcctggggggttgcaccttggccagacggcccttgggtgcccttgagccaggccaggcactggtcgtcgacaaatacCATGCCGTCGCTGCAGCAGCTGTGCTTCAg                                                                                                                   >  1:291575‑M1/86‑115 (MQ=255)                                                                cgctgaactcctggggggttgcaccttggccagacggcccttgggtgcccttgagccaggccaggcactggtcgtcgacaaatacCATGCCGTCGCTGCAGCAGCTGTGCTTCAg                                                                                                                   <  2:291575‑M1/30‑1 (MQ=255)                                                                   tGGCTGCGATCGTCGCCACACAGCTGGCGATGTGCGAGGTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTgcctggcct                                                                             <  1:1525703/150‑1 (MQ=255)                                                                    ggCTGCGACCGTCGCCACACAGCTGGCGATGTGCGAGGTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGTCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATg                                                                                                         >  1:1638251/1‑121 (MQ=255)                                                                    ggCTGCGACCGTCGCCACACAGCTGGCGATGTGCGAGGTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGTCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATg                                                                                                         <  2:1638251/121‑1 (MQ=255)                                                                     gCTGCGACCGTCGCCACACAGCTGGCGATGTGCGAGGTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCTACGACCAGTGcctcggctgg                                                                           >  2:264251/1‑150 (MQ=255)                                                                      cTGCGACCGTCGCCACACAGCTGGCGATGTGCGAGGTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCctggcctggc                                                                          <  1:686601/150‑1 (MQ=255)                                                                                   cacacaGCTGGCGATGTGCGAGGTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGc                                                                                                                        >  2:768876/1‑91 (MQ=255)                                                                                   cacacaGCTGGCGATGTGCGAGGTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGc                                                                                                                        <  1:768876/91‑1 (MQ=255)                                                                                   cacacaGCTGGCGATGTGCGAGGTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTAttt                                                                                                   >  1:1533842/1‑112 (MQ=255)                                                                                   cacacaGCTGGCGATGTGCGAGGTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTAttt                                                                                                   <  2:1533842/112‑1 (MQ=255)                                                                                    acacaGCTGGCGATGTGCGAGGTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCaa                                                            <  2:383740/150‑1 (MQ=255)                                                                                       caGCTGGCGATGTGCGAGGTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAggg                                                         <  1:599121/150‑1 (MQ=255)                                                                                                   tgCGAGGTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCaa                                             <  2:697879/150‑1 (MQ=255)                                                                                                   ggcccttgggtgcccttgagccaggccaggcactggtcgtcgacaaatacCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACg                                                                                                              >  2:113449‑M1/51‑85 (MQ=255)                                                                                                   ggcccttgggtgcccttgagccaggccaggcactggtcgtcgacaaatacCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACg                                                                                                              <  1:113449‑M1/35‑1 (MQ=255)                                                                                                      gAGGTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCAAGGt                                          <  1:1630213/150‑1 (MQ=255)                                                                                                      gAGGTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCAAGGt                                          <  2:189574/150‑1 (MQ=255)                                                                                                        ggTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCAAGGTGc                                        <  1:1234585/150‑1 (MQ=255)                                                                                                          tGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCAAGGTGCaa                                      <  2:403837/150‑1 (MQ=255)                                                                                                           ggCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCAACCAAGGGCCGTCTGGCCAAGGTGCAAc                                     >  1:415464/1‑150 (MQ=255)                                                                                                            gCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTcgac                                                                                             >  2:1580130/1‑93 (MQ=255)                                                                                                            gCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTcgac                                                                                             <  1:1580130/93‑1 (MQ=255)                                                                                                            gCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAg                                                                     <  2:556984/117‑1 (MQ=255)                                                                                                            gCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAg                                                                     >  1:556984/1‑117 (MQ=255)                                                                                                             tgcccttgagccaggccaggcactggtcgtcgacaaatacCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATg                                                                                                         <  2:1284329‑M1/40‑1 (MQ=255)                                                                                                             tgcccttgagccaggccaggcactggtcgtcgacaaatacCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATg                                                                                                         >  1:1284329‑M1/41‑80 (MQ=255)                                                                                                              cGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCTTGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCAAGGTGCAAcccc                                  >  2:411379/1‑150 (MQ=255)                                                                                                                     aTCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCAAGGTGCAACCCCCCAGGAg                           >  1:829891/1‑150 (MQ=255)                                                                                                                        cGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGc                                                <  2:726847/126‑1 (MQ=255)                                                                                                                        cGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGc                                                >  1:726847/1‑126 (MQ=255)                                                                                                                          ttGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCAAg                                            >  2:304412/1‑128 (MQ=255)                                                                                                                          ttGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCAAg                                            <  1:304412/128‑1 (MQ=255)                                                                                                                              gCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCAAGGTGCaa                                      <  2:401357/130‑1 (MQ=255)                                                                                                                              gCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCAAGGTGCaa                                      >  1:401357/1‑130 (MQ=255)                                                                                                                               ccACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCACGCACGCCCAAGGGCCGTCTGGCCAAGGTGCAACCCCCCAGGAGTTCAGCGGcc                 >  1:1334134/1‑150 (MQ=255)                                                                                                                                 aCCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGcctggcctgg                                                                           >  2:628297/1‑90 (MQ=255)                                                                                                                                 aCCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGcctggcctgg                                                                           <  1:628297/90‑1 (MQ=255)                                                                                                                                         gTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCAAGGTGCAACCCCCCAGGAGTTCAGCGGCCTGCGCgagga       <  2:829891/150‑1 (MQ=255)                                                                                                                                         gTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCAAGGTGCAACCCCCCAGGAGTTCAGCAGCCTGCGCgag         <  2:1099943/148‑1 (MQ=255)                                                                                                                                         gTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCAAGGTGCAACCCCCCAGGAGTTCAGCAGCCTGCGCgag         >  1:1099943/1‑148 (MQ=255)                                                                                                                                             gTACAGCGCATGCCCTCGCTGCAGCAGTCTTGTTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCAAGGTGCAACCCCCCAGGAGTTCAGCGGCCTGCGCGAGGAGCtt   <  1:902/150‑1 (MQ=255)                                                                                                                                              tACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCAAGGTGCAACCCCCCAGGAGTTCAGCGGCCTGCGCGAGGAGCTTg  >  2:342172/1‑150 (MQ=255)                                                                                                                                               aCAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCAAg                                            <  1:882532/107‑1 (MQ=255)                                                                                                                                               aCAGCGCATGCCCGCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCAAg                                            >  2:882532/1‑107 (MQ=255)                                                                                                                                                     |                                                                                                                                               CCGCCTTGCTGCAGCGTATTGAAAAGAGCCTGACGGCTTGCCCCTTCTGGATTCGTGGCAGCTTTCTGGCTGCGACCGTCGCCACACAGCTGGCGATGTGCGAGGTGGCCGAAGCCATCCGTTGTGCCACCGCCCGGTTTGTACAGCGCATGCCCTCGCTGCAGCAGCTGTGCTTCAGCGACGGCATGGTATTTGTCGACGACCAGTGCCTGGCCTGGCTCAAGGGCACCCAAGGGCCGTCTGGCCAAGGTGCAACCCCCCAGGAGTTCAGCGGCCTGCGCGAGGAGCTTG  >  NC_002947/3002889‑3003179

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.