| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3029501 | 65 (1.090) | 6 (0.110) | 6/222 | NT | 9.0% | coding (1111/1653 nt) | pcaY | aromatic acid chemoreceptor |
| ? | NC_002947 | = 3029514 | 61 (1.100) | coding (1124/1653 nt) | pcaY | aromatic acid chemoreceptor | |||||
ACGGCAGTGGAGGAAGTTGCGCGCAACGCGATCACCACCTCGCAAACCACCAGTGAATCCAACCAGCTGGCCGCGCAAAGCCGCCGGCAAGTCAGCGAAAACATCGACGGCACCGAAGCCATGACCCGCGAAATCCAGACCAGCAGTGCGCACCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3029345‑3029501‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcacctgcCCCACCAACTGCTGCAGGTGCGCACTGCTGGTCTGGATTTCGCGGGTCATGGCTTCGGTGCCGTCGATGTTTTCGCTGACTTGCCGGCGGCTTTGCGCGGCCAGCTGGTTGGATTCACTGGTGGTTTGCGAGGTGGTGATCGCGTTGCG < NC_002947/3029514‑3029366 ACGGCAGTGGAGGAAGTTGCGCGCAACGCGATCACCACCTCTCAAACCACCAGTGAATCCAACCAGCTGGCCGCGCAAAGCCGCCGGCAAGTCAGCGAAAACATCGACGGCACCGAAGCCATGACCCGCGAAATCCAGACCAGCAGTGCG > 2:600917/1‑150ACGGCAGTGGAGGAAGTTGCGCGCAACGCGATCACCACCTCGCAAACCACCAGTGAATCCAACCAGCTGGCCGCGCAAAGCCGCCGGCAAGTCAGCGAAAACATCGACGGCACCGAAGCCATGACCCGCGAAATCCAGACCAGCAGTGCG > 2:1018354/1‑150 AAACATCGACGGCACCGAAGCCATGACCCGCGAAATCCAGACCAGCAGTGCGCACCTGCCCCACCAACTGCTGCAGG < 1:375498/77‑1 AAACATCGACGGCACCGAAGCCATGACCCGCGAAATCCAGACCAGCAGTGCGCACCTGCCCCACCAACTGCTGCAGG > 2:375498/1‑77 ACGGCACCGAAGCCATGACCCGCGAAATCCAGACCAGCAGTGCGCACCTGCCCCACCAACTGCTGCAGGT < 1:753566/70‑1 ACGGCACCGAAGCCATGACCCGCGAAATCCAGACCAGCAGTGCGCACCTGCCCCACCAACTGCTGCAGGT > 2:753566/1‑70 AATCCAGACCAGCAGTGCGCACCTGCAGCAGTTGGTGGGGCAGGTGCGCACTGCTGGTCTGGATTTCGCGGGTCATGGCTTCGGTGCCGTCGATGTTTTCGCTGACTTGCCGGCGGCTTTGCGCGGCCAGCTGGTTGGATTCAC > 1:1642950/1‑144 AATCCAGACCAGCAGTGCGCACCTGCAGCAGTTGGTGGGGCAGGTGCGCACTGCTGGTCTGGATTTCGCGGGTCATGGCTTCGGTGCCGTCGATGTTTTCGCTGACTTGCCGGCGGCTTTGCGCGGCCAGCTGGTTGGATTCAC < 2:1642950/144‑1 GCACCTGCCCCACCAACTGCTGCAGGTGCGAACTGCTGGTCTGGATTTCGCGGGTCATGGCTTCGGTGCCGTCGATGTTTTCGCTGACTTGCCGGCGGCTTTGCGCGGCCAGCTGGTTGGATTCACTGGTGGTTTGCGAGGTGGTGATCG > 2:723021/1‑150 CTGCCCCACCAACTGCTGCAGGTGCGCACTGCTGGTCTGGATTTCGCGGGTCATGGCTTCGGTGCCGTCGATGTTTTCGCTGACTTGCCGGCGGCTTTGCGCGGCCAGCTGGTTGGATTCACTGGTGGTTTGCGAGGTGGTGATCGCGTT > 1:7178/1‑150 CTGCCCCACCAACTGCTGCAGGTGCGCACTGCTGGTCTGGATTTCGCGGGTCATGGCTTCGGTGCCGTCGATGTTTTCGCTGACTTGCCGGCGGCTTTGCGCGGCCAGCTGGTTGGATTCACTGGTGGTTTGCGAGGTGGTGATCGCGTT > 2:717434/1‑150 CCCCACCAACTGCTGCAGGTGCGCACTGCTGGTCTGGATTTCGCGGGTCATGGCTTCGGTGCCGTCGATGTTTTCGCTGACTTGCCGGCGGCTTTGCGCGGCCAGCTGGTTGGATTCACTGGTGGTTTGCGAGGTGGTGATCGCGTTGCG > 1:20144/1‑150 ACGGCAGTGGAGGAAGTTGCGCGCAACGCGATCACCACCTCGCAAACCACCAGTGAATCCAACCAGCTGGCCGCGCAAAGCCGCCGGCAAGTCAGCGAAAACATCGACGGCACCGAAGCCATGACCCGCGAAATCCAGACCAGCAGTGCGCACCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3029345‑3029501‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcacctgcCCCACCAACTGCTGCAGGTGCGCACTGCTGGTCTGGATTTCGCGGGTCATGGCTTCGGTGCCGTCGATGTTTTCGCTGACTTGCCGGCGGCTTTGCGCGGCCAGCTGGTTGGATTCACTGGTGGTTTGCGAGGTGGTGATCGCGTTGCG < NC_002947/3029514‑3029366 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |