New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3419393 =	59 (0.990)	3 (0.060)	3/216	NT	5.9%	intergenic (‑5/+103)	PP_5553/PP_3033	hypothetical protein/CI/C2 family transcriptional regulator
	?	NC_002947	3419425 =	43 (0.800)					intergenic (‑37/+71)	PP_5553/PP_3033	hypothetical protein/CI/C2 family transcriptional regulator

GGAAGAGACCCACATCTGCGGTAAGGTCGTGGGCTCCTTCATCCCCGAGTGATCAACCCATCGACCCACGGCCCTCTTAAGAAATCAATTTTCAGTTGACATAAAACAACCACAAGTTGATATTTGCCTCACTCTTCCACCACAGAGTGAGGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3419547‑3419393 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agagtgaggcaaATATCAACTTGTGGTTGTTTTATGTCAACTGAAAATTGATTTCTTAAGAGGGCCGTGGGTCGATGGGTTGATCACTCGGGGATGAAGGAGCCCACGACCTTACCGCAGATGTGGGTCTCTTCCGTGATGTCTATGATTGGATACTGAG  >  NC_002947/3419425‑3419572                                                                                                                                                                                                                                                                                                                 GGAAGAGACCCACATCTGCGGTAAGGTCGTGGGCTCCTTCATCCCCGAGTGATCAACCCATCGACCCACGGCCCTCTTAAGAAATCAATTTTCAGTTGACATAAAACAACCACAAGTTGATATTTGCCTCACTCTTCCACCACAGAGTGA                                                                                                                                                           <  2:236545/150‑1          CCACATATGCGGTAAGGTCGTGGGCTCCTTCATCCCCGAGTGCTCAACCCATCGACCCACGGCCCTCTTAAGAACTCAATTTTCAGTGGACATAAAACAACCCCAAGTTGATATTTTCCTCACTCTTCCACCACAGAGTGAGGaactaca                                                                                                                                                  >  2:751670/1‑143              ATCTGCGGTAAGGTCGTGGGCTCCTTCATCCCCGAGTGATCAACCCATCGACCCACGGCCCTCTTAAGAAATCAATTTTCAGTTGACATAAAACAACCACAAGTTGATATTTGCCTCACTCTTCCACCACAGAGTGAGGCAA                                                                                                                                                      >  1:1327978/1‑142              ATCTGCGGTAAGGTCGTGGGCTCCTTCACCCCCGAGTGATCAACCCATCGACCCACGGCCCTCTTAAGAAATCAATTTTCAGTTGACATAAAACAACCACAAGTTGATATTTGCCTCACTCTTCCACCACAGAGTGAGGCAA                                                                                                                                                      <  2:1327978/142‑1                    GGTAAGGTCGTGGGCTCCTTCATCCCCGAGTGATCAACCCATCGACCCACGGCCCTCTTAAGAAATCAATTTTCAGTTGACATAAAACAACCACAAGTTGATATTTGCCTCACTCTGTGGTGGAAGAGTGAGGCAAATATCAACTTGTGG                                                                                                                                        <  1:664657/150‑1                                                                                                                               CCTCACTCTTCCACCACAGAGTGAGGCAAATATCAACTTGTGGTTGTTTTATGTCAACTGAAAATTGATTTCTTAAGAGG                                                                                                   <  1:657142/80‑1                                                                                                                               CCTCACTCTTCCACCACAGAGTGAGGCAAATATCAACTTGTGGTTGTTTTATGTCAACTGAAAATTGATTTCTTAAGAGG                                                                                                   >  2:657142/1‑80                                                                                                                                                AGAGTGAGGCAAATATCAACTTGTGGTTGTTTTATGTCAACTGAAAATTGATTTCTTAAGAGGGCCGTGGGTCGATGGGTTGATCACTCGGGGATGAAGGAGCCCACGACCTTACCGCAGATGTGGGTCTCTTCCGTGATGTCTATGATT            <  1:236545/150‑1                                                                                                                                                 GAGTGAGGCAAATATCAACTTGTGGTTGTTTTATGTCAACTGAAAATTGATTTCTTAAGAGGGCCGTGGGTCGATGGGTTGATCACTCGGGGATGAAGGAGCCCACGACCTTACCGCAGATGTGGGTCTCTTCCGTGATGT                    >  1:316975/1‑141                                                                                                                                                 GAGTGAGGCAAATATCAACTTGTGGTTGTTTTATGTCAACTGAAAATTGATTTCTTAAGAGGGCCGTGGGTCGATGGGTTGATCACTCGGGGATGAAGGAGCCCACGACCTTACCGCAGATGTGGGTCTCTTCCGTGATGT                    <  2:316975/141‑1                                                                                                                                                 GAGTGAGGCAAATATCAACTTGTGGTTGTTTTATGTCAACTGAAAATTGATTTCTTAAGAGGGCCGTGGGTCGATGGGTTGAT                                                                              <  1:1585559/83‑1                                                                                                                                                 GAGTGAGGCAAATATCAACTTGTGGTTGTTTTATGTCAACTGAAAATTGATTTCTTAAGAGGGCCGTGGGTCGATGGGTTGAT                                                                              >  2:1585559/1‑83                                                                                                                                                    TGAGGCAAATATCAACTTGTGGTTGTTTTATGTCAACTGAAAATTGATTTCTTAAGAGGGCCGTGGGTCGATGGGTTGATCACTCGGGGATGAAGGAGCCCACGACCTTACCGCAGATGTGGGTCTCTTCCGTGATGTCTATGATTGGAT        >  1:1420016/1‑150                                                                                                                                                          AAATATCAACTTGTTGTTGTTTTATGTCAACTGAAAATTGATTTCTTAAGAGGGCCGTGGGTCGATGGGTTGATCACTCGGGGATGAAGGAGCCCACGACCTTACCGCAGATGTGGGTCTCTTCCGTGATGTCTATGATTGGATACTGAG  <  1:594731/150‑1                                                                                                                                                                                                                                                                                                                 GGAAGAGACCCACATCTGCGGTAAGGTCGTGGGCTCCTTCATCCCCGAGTGATCAACCCATCGACCCACGGCCCTCTTAAGAAATCAATTTTCAGTTGACATAAAACAACCACAAGTTGATATTTGCCTCACTCTTCCACCACAGAGTGAGGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3419547‑3419393 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agagtgaggcaaATATCAACTTGTGGTTGTTTTATGTCAACTGAAAATTGATTTCTTAAGAGGGCCGTGGGTCGATGGGTTGATCACTCGGGGATGAAGGAGCCCACGACCTTACCGCAGATGTGGGTCTCTTCCGTGATGTCTATGATTGGATACTGAG  >  NC_002947/3419425‑3419572

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.