New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3419393 =	59 (0.990)	3 (0.060)	3/216	NT	5.9%	intergenic (‑5/+103)	PP_5553/PP_3033	hypothetical protein/CI/C2 family transcriptional regulator
	?	NC_002947	3419425 =	43 (0.800)					intergenic (‑37/+71)	PP_5553/PP_3033	hypothetical protein/CI/C2 family transcriptional regulator

GTAGTGACGAATGCGCAGCCGTGTTGCTTGGCCAGTCGCCGGACTTTGAAGGTTAGGTCGATGGTTGCGGCTGCTGGATGGACATGTAGTGATGCGGTGGCGTGCATGGTATTGCCTCACTCTGTGGTGGAAGAGTGAGGCAAATATCAACTTGTGGTTGTTTTATGTCAACTGAAAATTGATTTCTTAAGAGGGCCGTGGGTCGATGGGTTGATCACTCGGGGATGAAGGAGCCCACGACCTTACCGCAGATGTGGGTCTCTTCCGTGATGTCTATGATTGGATACTGAG  >  NC_002947/3419282‑3419572                                                                                                                                                |                                                                                                                                                    gTAGTGACGAATGCGCAGCCGTGTTGCTTGGCCAGTCGCCGGACTTTGAAGGTTAGGTCGATGGTTGCGGCTGCTGGATGGACATGTAGTGATGCGGTGGCGTGCATGGTATTGCCTCACTCTGTGGTGGAAGAGTGAGGCAAATATCaa                                                                                                                                               <  2:692226/150‑1 (MQ=255)  tAGTGACGAATGCGCAGCCGTGTTGCTTGGCCAGTCGCCGGACTTTGAAGGTTAGGTCGATGGTTGCGGCTGCTGGATGGACATGTAGTGATGCGGTGGCGTGCATGGTATTGCCTCACTCTGTGGTGGAAGAGTGAGGCAAATATCAAc                                                                                                                                              >  1:1508804/1‑150 (MQ=255)    gTGACGAATGCGCAGCCGTGTTGCTTGGCCAGTCGCCGGACTTTGAAGGTTAGGTCGATGGTTGCGGCTGCTGGATGGACATGTAGTGATGCGGTGGCGTGCATGGTATTGCCTCACTCTGTGGTGGAAGAGTGAGGCAAATATCAACtt                                                                                                                                            <  1:1272078/150‑1 (MQ=255)     tGACGAATGCGCAGCCGTGTTGCTTGGCCAGTCGCCGGACTTTGAAGGTTAGGTCGATGGTTGCGGCTGCTGGATGGACATGTAGTGATGCGGTGGCGTGCATGGTATTGCCTCACTCTGTGGTGGAAGAGTGAGGCAAATATCAACTtg                                                                                                                                           >  1:295421/1‑150 (MQ=255)        ggtaaggtcgtgggctccttcatccccgagtgatcaacccatcgacccacggccctcttaagaaatcaattttcagttgacataaaacaaccacaagttgatatttgcctcactctgtggtggaagagtgaggcaaATATCAACTTGTgg                                                                                                                                        <  1:664657‑M2/14‑1 (MQ=255)        cGAATGCGCAGCCGTGTTGCTTGGCCAGTCGCCGGACTTTGAAGGTTAGGTCGATGGTTGCGGCTGCTGGATGGACATGTAGTGATGCGGTGGCGTGCATGGTATTGCCTCACTCTGTGGTGGAAGAGTGAGGCAAATATCAACTTGTgg                                                                                                                                        <  2:1066815/150‑1 (MQ=255)         gAATGCGCAGCCGTGTTGCTTGGCCAGTCGCCGGACTTTGAAGGTTAGGTCGATGGTTGCGGCTGCTGGATGGACATGTAGTGATGCGGTGGCGTGCATGGTATTGCCTCACTCTGTGGTGGAAGAGTGAGGCAAATATCAACTTGTGgt                                                                                                                                       >  1:891012/1‑150 (MQ=255)              cgcAGCCGTGTTGCTTGGCCAGTCGCCGGACTTTGAAGGTTAGGTCGATGGTTGCGGCTGCTGCATGGACATGTAGTGATGCGGTGGCGTGCATGGTATTGCCTCACTCTGTGGTGGAAGAGTGAGGCAAATATCAACTTGTGGTTGttt                                                                                                                                  >  1:526018/1‑150 (MQ=255)               gcAGCCGTGTTGCTTGGCCAGTCGCCGGACTTTGAAGGTTAGGTCGATGGTTGCGGCTGCTGGATGGACATGTAGTGATGCGGTGGCGTGCATGGTATTGCCTCACTCTGTGGTGGAAGAGTGAGGCAAATATCAACTTGTGGTTGtttt                                                                                                                                 <  2:1157825/150‑1 (MQ=255)                            ttGGCCAGTCGCCGGACTTTGAAGGTTAGGTCGATGGTTGCGGCTGCTGGATGGACATGTAGTGATGCGGTGGCGTGCATGGTATTGCCTCACTCTGTGGTGGAAGAGTGAGGCAAATATCAACTTGTGGTTGTTTTAt                                                                                                                               <  1:149456/139‑1 (MQ=255)                            ttGGCCAGTCGCCGGACTTTGAAGGTTAGGTCGATGGTTGCGGCTGCTGGATGGACATGTAGTGATGCGGTGGCGTGCATGGTATTGCCTCACTCTGTGGTGGAAGAGTGAGGCAAATATCAACTTGTGGTTGTTTTAt                                                                                                                               >  2:149456/1‑139 (MQ=255)                             tGGCCAGTCGCCGGACTTTGAAGGTTAGGTCGATGGTTGCGGCTGCTGGATGGACATGTAGTGATGCGGTGGCGTGCATGGTATTGCCTCACTCTGTGGTGGAAGAGTGAGGCAAATATCAACTTGTGGTTGTTTTATGTCAACTGaaaa                                                                                                                   <  1:1197447/150‑1 (MQ=255)                               gCCAGTCGCCGGACTTTGAAGGTTAGGTCGATGGTTGCGGCTGCTGGATGGACATGTAGTGATGCGGTGGCGTGCATGGTATTGCCTCACTCTGTGGTGGAAGAGTGAGGCAAATATCAAc                                                                                                                                              <  1:1603144/121‑1 (MQ=255)                               gCCAGTCGCCGGACTTTGAAGGTTAGGTCGATGGTTGCGGCTGCTGGATGGACATGTAGTGATGCGGTGGCGTGCATGGTATTGCCTCACTCTGTGGTGGAAGAGTGAGGCAAATATCAAc                                                                                                                                              >  2:1603144/1‑121 (MQ=255)                                   gTCGCCGGACTTTGAAGGTTAGGTCGATGGTTGCGGCTGCTGGATGGACATGTAGTGATGCGGTGGCGTGCATGGTATTGCCTCACTCTGTGGTGGAAGAGTGAGGCAAATATCAACTTGTGGTTGTTTTATGTCaa                                                                                                                          <  2:592773/137‑1 (MQ=255)                                   gTCGCCGGACTTTGAAGGTTAGGTCGATGGTTGCGGCTGCTGGATGGACATGTAGTGATGCGGTGGCGTGCATGGTATTGCCTCACTCTGTGGTGGAAGAGTGAGGCAAATATCAACTTGTGGTTGTTTTATGTCaa                                                                                                                          >  1:592773/1‑137 (MQ=255)                                        cGGACGTTGAAGGTTAGGTCGATGGTTGCGGCTGCTGGATGGACATGTAGTGATGCGGTGGCGTGCATGGTATTGCTTCACTCTGTGGTGGAAGAGGGAGGCAAATATGAGCTTGTGGTTGTTTTATGTCAACTGAAAATTTATTTCTTa                                                                                                        >  2:570656/1‑150 (MQ=255)                                         ggACTTTGAAGGTTAGGTCGATGGTTGCGGCTGCTGGATGGACATGTAGTGATGCGGTGGCGTGCATGGTATTGCCTCACTCTGTGGTGGAAGAGTGAGGCAAATATCAACTTGTGGTTGTTTTATGTCAACTGAAAATTGATTTCTTaa                                                                                                       >  2:475328/1‑150 (MQ=255)                                             tttGAAGGTTAGGTCGATGGTTGCGGCTGCTGGATGGACATGTAGTGATGCGGTGGCGTGCATGGTATTGCCTCACTCTGTGGTGGAAGAGTGAGGCAAATATCAACTTGTGGTTGTTTTATGTCAACTGAAAATTGATTTCTTAAGAgg                                                                                                   <  2:295421/150‑1 (MQ=255)                                                  aGGTTAGGTCGATGGTTGCGGCTGCTGGATGGACATGTAGTGATGCGGTGGCGTGCATGGTATTGCCTCACTCTGTGGTGGAAGAGTGAGGCAAATATCAACTTGTGGTTGTTTTATGTCAACTGAAAATTGATTTCTTAAGAGGGCCGt                                                                                              >  1:1088989/1‑150 (MQ=255)                                                          tCGATGGTTGCGGCTGCTGGATGGACATGTAGTGATGCGGTGGCGTGCATGGTATTGCCTCACTCTGTGGTGGAAGAGTGAGGCAAATATCAACTTGTGGTTGTTTTATGTCAACTGAAAATTGATTTCTTAAGAGGGCCGTGGGTCGAt                                                                                      <  1:177894/150‑1 (MQ=255)                                                             gtGGTTGCGGCTGCTGGAAGTACATGTAGTGATGGGGTGGGGTGCAGGGTATTGCCTCACTCTGTGGTGGAAGAGTGAGGCAAATATCAACTTGTGGTTGTTTTATGTCAACTGAAAATTGATTTCTTAAGAGGGCCGTGGGTCGATggg                                                                                   <  2:653042/149‑1 (MQ=255)                                                              tGGTTGCGGCTGGTGGATGGACATGTAGTGATGCGGTGGCGTGCATGGTATTGCGTCACTCTGTGGTGGAAGAGTGAGGCAAATATCAACCTGTGGTTGTTTTATGTCAACTGAAAATTGATTTCTTAAGAGGGCCGTGGGTCGATGGGt                                                                                  <  2:1288949/150‑1 (MQ=255)                                                               ggTTGCGGCTGCTGGATGGACCTGCCGTGCTGCGGTGGCGTTCATGGTATTGGCTCACTCTGGGGTGGAAGAGTGAGGCAAATATCAACTTGTGGTTGTTTTATGTCAACTGAAAATTGATTTCTTAAGAGGGCCGTGGGTCGATGGGtt                                                                                 <  2:1088989/150‑1 (MQ=255)                                                                     ggCTGCTGGATGGACATGTAGTGATGCGGTGGCGTGCATGGTATTGCCTCACTCTGTGGTGGAAGAGTGAGGCAAATATCAACTTGTGGTTGTTTTATg                                                                                                                              >  2:1046812/1‑99 (MQ=255)                                                                     ggCTGCTGGATGGACATGTAGTGATGCGGTGGCGTGCATGGTATTGCCTCACTCTGTGGTGGAAGAGTGAGGCAAATATCAACTTGTGGTTGTTTTATg                                                                                                                              <  1:1046812/99‑1 (MQ=255)                                                                         gctgGATGGACATGTAGTGATGCGGTGGCGTGCATGGTATTGCCTCACTCTGTGGTGGAAGAGTGAGGCAAATATCAACTTGTGGTTGTTTTATGTCAACTGAAAATTGATTTCTTAAGAGGGCCGTGGGTCGATGGGTTGATCACTCgg                                                                       <  2:1508804/150‑1 (MQ=255)                                                                            ggatggaCATGTAGTGATGCGGTGGCGTGCATGGTATTGCCTCACTCTGTGGTGGAAGAGTGAGGCAAATATCAACTTGTGGTTGTTTTATGTCAACTGAAAATTGATTTCTTAAGAGGGCCGt                                                                                              <  1:991778/124‑1 (MQ=255)                                                                            ggatggaCATGTAGTGATGCGGTGGCGTGCATGGTATTGCCTCACTCTGTGGTGGAAGAGTGAGGCAAATATCAACTTGTGGTTGTTTTATGTCAACTGAAAATTGATTTCTTAAGAGGGCCGt                                                                                              >  2:991778/1‑124 (MQ=255)                                                                               tggaCATGTAGTGATGCGGTGGCGTGCATGGTATTGCCTCACTCTGTGGTGGAAGAGTGAGGCAAATATCAACTtgtg                                                                                                                                         <  1:1213689/78‑1 (MQ=255)                                                                               tggaCATGTAGTGATGCGGTGGCGTGCATGGTATTGCCTCACTCTGTGGTGGAAGAGTGAGGCAAATATCAACTtgtg                                                                                                                                         >  2:1213689/1‑78 (MQ=255)                                                                                 gaCATGTAGTGATGCGGTGGCGTGCCCGGTATTGCTTCAGTTTGTGGTTGAAGAGTGAGGCAAATATCAACTTGTGGTTGTTTTATGTCAACTGAAAATTGATTTCTTAAGAGGGCCGTGGGTCGATGGGTTGATCACTCGGGGATGAAg                                                               <  1:1598601/150‑1 (MQ=255)                                                                                 gaCATGTAGTGATGCGGTGGCGTGCATGGTATTGCCTCACTCTGTGGTGGAAGAGTGAGGCAAATATCAACTTGTGGTTGTTTTATGTCAACTGAAAATTGATTTCTTAAGAGGGCCGTGGGTCGATGGGTTGATCACTCGGGGATGAAg                                                               <  1:475328/150‑1 (MQ=255)                                                                                     tGTAGTGATGCGGTGGCGTGCATGGTATTGCCTCACTCTGTGGTGGAAGAGTGAGGCAAATATCAACTTGTGGTTGTTTTATGTCAACTGAAAATTGATTTCTTAAGAGGGCCGTGGGTCGATGGGTTGATCACTCgg                                                                       <  2:663476/138‑1 (MQ=255)                                                                                     tGTAGTGATGCGGTGGCGTGCATGGTATTGCCTCACTCTGTGGTGGAAGAGTGAGGCAAATATCAACTTGTGGTTGTTTTATGTCAACTGAAAATTGATTTCTTAAGAGGGCCGTGGGTCGATGGGTTGATCACTCgg                                                                       >  1:663476/1‑138 (MQ=255)                                                                                      gTAGCGATGCGGTGGCGTGCATGGTATTGCCTCACTCTGTGGTGGAAGAGTGAGGCAAATATCAACTTGTGGTTGTTTTATGTCACCTGAAAATTGATTTCTTAAGAGGGCCCTGGGTCGATGGGTTGATCACTCGGGGATGAAGGAGcc                                                          >  1:751670/1‑150 (MQ=255)                                                                                             tGCGGTGGCGTGCATGGTATTGCCTCACTCTGTGGTGGAAGAGTGAGGCAAATATCAACTTGTGGTTGTTTTATGTCAACTGAGAATTGATTTCTTAAGAGTGCCGTGGGTCGATGGGTTGATCACTCGGTGATGAAGGAGCCCACGAcc                                                   >  1:1187664/1‑150 (MQ=255)                                                                                                  tGGCGTGCATGGTATTGCCTCACTCTGTGGTGGAAGAGTGAGGCAAATATCAACTTGTGGTTGTTTTATGTCAACTGAAAATTGATTTCTTAAGAGGGCCGTGGGTCGATGGGTTGATCACTCGGGGATGAAGGAGCCCACGACCTTAcc                                              <  2:797558/150‑1 (MQ=255)                                                                                                  ccacaagttgatatTTGCCTCACTCTTCCACCACAGAGTGAGGCAAATATCAACTTGTGGTTGTTTTATGTCAACTGAAAATTGATTTCTTAAGAGGGCCGTGGGTCGATGGGTTGATCACTCGGGGATGAAGGAGCCCACGACCTTAcc                                              <  1:664657‑M1/136‑1 (MQ=255)                                                                                                            tgtagttCCTCACTCTGTGGTGGAAGAGTGAGGAAAATATCAACTTGGGGTTGTTTTATGTCCACTGAAAATTGAGTTCTTAAGAGGGCCGTGGGTCGATGGGTTGAGCACTCGGGGATGAAGGAGCCCACGACCTTACCGCATATGTgg                                    >  2:751670‑M1/8‑150 (MQ=255)                                                                                                            ggTATTGCCTCACTCTGTGGTGGAAGAGTGAGGCAAATATCAACTTGTGGTTGTTTTATGTCAACTGAAAATTGATTTCTTAAGAGGGCCGTGGGt                                                                                          >  2:121400/1‑96 (MQ=255)                                                                                                            ggTATTGCCTCACTCTGTGGTGGAAGAGTGAGGCAAATATCAACTTGTGGTTGTTTTATGTCAACTGAAAATTGATTTCTTAAGAGGGCCGTGGGt                                                                                          <  1:121400/96‑1 (MQ=255)                                                                                                            ggTATTGCCTCACTCTGTGGTGGAAGAGTGAGGCAAATATCAACTTGTGGTTGTTTTATGTCAACTGAAAATTGATTTCTTAAGAGGGCCGTGGGTCGATGGGTTGATCACTCGGGGATGAAGGAGCCCACGACCTTACCGCAGATGTgg                                    <  1:672834/150‑1 (MQ=255)                                                                                                              tATTGCCTCACTCTGTGGTGGAAGAGTGAGGCAAATATCAACTTGTGGTTGTTTTATGTCAACTGAAAATTGATTTCTTAAGAGGGCCGTGGGTCGATGGGTTGATCACTCGGGGATGAAGGAGCCCACGACCTTACCGCAGATGTGCGt                                  <  2:683218/150‑1 (MQ=255)                                                                                                                TTGCCTCACTCTGTGGTGGAAGAGTGAGGCAAATATCAACTTGTGGTTGTTTTATGTCAACTGAAAATTGATTTCTTAAGAGGGCCGTGGGTCGATGGGTTGATCACTCGGGGGTGAAGGAGCCCACGACCTTACCGCAGAt                                        <  2:1327978‑M1/142‑1 (MQ=255)                                                                                                                TTGCCTCACTCTGTGGTGGAAGAGTGAGGCAAATATCAACTTGTGGTTGTTTTATGTCAACTGAAAATTGATTTCTTAAGAGGGCCGTGGGTCGATGGGTTGATCACTCGGGGATGAAGGAGCCCACGACCTTACCGCAGAt                                        >  1:1327978‑M1/1‑142 (MQ=255)                                                                                                                   cctcactcttccaccacagagtgaggcaaATATCAACTTGTGGTTGTTTTATGTCAACTGAAAATTGATTTCTTAAGAgg                                                                                                   <  1:657142‑M2/51‑1 (MQ=255)                                                                                                                   cctcactcttccaccacagagtgaggcaaATATCAACTTGTGGTTGTTTTATGTCAACTGAAAATTGATTTCTTAAGAgg                                                                                                   >  2:657142‑M2/30‑80 (MQ=255)                                                                                                                     TCACTCTGTGGTGGAAGAGTGAGGCAAATATCAACTTGTGGTTGTTTTATGTCAACTGAAAATTGATTTCTTAAGAGGGCCGTGGGTCGATGGGTTGATCACTCGGGGATGAAGGAGCCCACGACCTTACCGCAGATGTGGGTCTCTTcc                           <  2:236545‑M1/150‑1 (MQ=255)                                                                                                                             tggtggAAGAGTGAGGCAAATATCAACTTGTGGTTGTTTTATGTCAACTGAAAATTGATTTCTTAAGAGGGCCGTGGGt                                                                                          >  2:91514/1‑79 (MQ=255)                                                                                                                             tggtggAAGAGTGAGGCAAATATCAACTTGTGGTTGTTTTATGTCAACTGAAAATTGATTTCTTAAGAGGGCCGTGGGt                                                                                          <  1:91514/79‑1 (MQ=255)                                                                                                                               gtggAAGAGTGAGGCAAATATCAACTTGTGGTTGTTTTATGTCAACTGAAAATTGATTTCTTAAGAGGGCCGTGGGTCGATGGGTTGATCACTCGGGGATGAAGGAGCCCACGACCTTACCGCAGATGTGGGTCTCTTCCGTGATGTCTa                 <  1:796105/150‑1 (MQ=255)                                                                                                                                tggAAGAGTGAGGCAAATATCAACTTGTGGTTGTTTTATGTCAACTGAAAATTGATTTCTTAAGAGGGCCGTGGGTCGATGGGTTGATCACTCGGGGATGAAGGAGCCCACGACCTTACCGCAGATGTGGGTCTCTTCCGTGATGTCTAt                >  2:768093/1‑150 (MQ=255)                                                                                                                                  gAAGAGTGAGGCAAATATCAACTTGTGGTTGTTTTATGTCAACTGAAAATTGATTTCTTAAGAGGGCCGTGGGTCGATGGGGTTGTCACTCGGGGATGAAGGAGCCCACGACCTTACCGCAGATGTGGGTCCCTTCCGTGATGTCTATGa              >  1:515682/1‑150 (MQ=255)                                                                                                                                    agagtgaggcaaATATCAACTTGTGGTTGTTTTATGTCAACTGAAAATTGATTTCTTAAGAGGGCCGTGGGTCGATGGGTTGATCACTCGGGGATGAAGGAGCCCACGACCTTACCGCAGATGTGGGTCTCTTCCGTGATGTCTATGAtt            <  1:236545‑M2/138‑1 (MQ=255)                                                                                                                                     gagtgaggcaaATATCAACTTGTGGTTGTTTTATGTCAACTGAAAATTGATTTCTTAAGAGGGCCGTGGGTCGATGGGTTGAt                                                                              <  1:1585559‑M2/72‑1 (MQ=255)                                                                                                                                     gagtgaggcaaATATCAACTTGTGGTTGTTTTATGTCAACTGAAAATTGATTTCTTAAGAGGGCCGTGGGTCGATGGGTTGAt                                                                              >  2:1585559‑M2/12‑83 (MQ=255)                                                                                                                                     gagtgaggcaaATATCAACTTGTGGTTGTTTTATGTCAACTGAAAATTGATTTCTTAAGAGGGCCGTGGGTCGATGGGTTGATCACTCGGGGATGAAGGAGCCCACGACCTTACCGCAGATGTGGGTCTCTTCCGTGATGt                    <  2:316975‑M2/130‑1 (MQ=255)                                                                                                                                     gagtgaggcaaATATCAACTTGTGGTTGTTTTATGTCAACTGAAAATTGATTTCTTAAGAGGGCCGTGGGTCGATGGGTTGATCACTCGGGGATGAAGGAGCCCACGACCTTACCGCAGATGTGGGTCTCTTCCGTGATGt                    >  1:316975‑M2/12‑141 (MQ=255)                                                                                                                                       gttaGGCAAATATCAACTTTTGGTTGTTTTATGTCAACGGAAAATTGATTTCTTAAGATGTCCGTGAATCGATTTGTTGAGCACGCCGCGATGAAGAAGCCCACGACCTTACCGGAGATGTGGGTCTCTTCCTTGATGTCTATGATTGGa         <  2:526018/147‑1 (MQ=255)                                                                                                                                        tgaggcaaATATCAACTTGTGGTTGTTTTATGTCAACTGAAAATTGATTTCTTAAGAGGGCCGTGGGTCGATGGGTTGATCACTCGGGGATGAAGGAGCCCACGACCTTACCGCAGATGTGGGTCTCTTCCGTGATGTCTATGATTGGAt        >  1:1420016‑M2/9‑150 (MQ=255)                                                                                                                                              aaATATCAACTTGTTGTTGTTTTATGTCAACTGAAAATTGATTTCTTAAGAGGGCCGTGGGTCGATGGGTTGATCACTCGGGGATGAAGGAGCCCACGACCTTACCGCAGATGTGGGTCTCTTCCGTGATGTCTATGATTGGATACTGAg  <  1:594731‑M2/148‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                    GTAGTGACGAATGCGCAGCCGTGTTGCTTGGCCAGTCGCCGGACTTTGAAGGTTAGGTCGATGGTTGCGGCTGCTGGATGGACATGTAGTGATGCGGTGGCGTGCATGGTATTGCCTCACTCTGTGGTGGAAGAGTGAGGCAAATATCAACTTGTGGTTGTTTTATGTCAACTGAAAATTGATTTCTTAAGAGGGCCGTGGGTCGATGGGTTGATCACTCGGGGATGAAGGAGCCCACGACCTTACCGCAGATGTGGGTCTCTTCCGTGATGTCTATGATTGGATACTGAG  >  NC_002947/3419282‑3419572

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.