| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3622266 | 61 (1.020) | 10 (0.190) | 7/216 | NT | 15.5% | intergenic (‑186/+40) | PP_3192/PP_3193 | hypothetical protein/hypothetical protein |
| ? | NC_002947 | = 3622288 | 54 (1.000) | intergenic (‑208/+18) | PP_3192/PP_3193 | hypothetical protein/hypothetical protein | |||||
CTATGGTGGCCCTGGAGAATACTGGGCACAAGACGGATCTTTGCCGGGTCGGGATCAAGGCCTGGCTGCGAGCCGCTCGCCTCGGCCATTACTGCGTCAGCAGCATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3622110‑3622266‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccttggcctgTTCCACCAACAATTGGCGGAGCCAGGCCAAGGCGAGGTCGCCCCATGCTGCGGATGCCTCTGGAGGACCTGGGATGCTGCTGACGCAGTAATGGCCGAGGCGAGCGGCTCGCAGCCAGGCCTTGATCCCGACCCGGCAAAGATCC < NC_002947/3622288‑3622144 CTATGGTGGCCCTGGAGAATACTGGGCACAAGACGGATCTTTGCCGGGTCGGGATCAAGGCCTGGCTGCGAGCCGCTCGCCTCGGCCATTACTGCGTCAGCAGCATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCT > 1:1309406/1‑150 TGGTGGCCCTGGAGAATACTGGGCACAAGACGGATCTTTGCCGGGTCGGGATCAAGGCCTGGCTGCGAGCCGCTCGCCTCGGCCATTACTGCGTCAGCAGCATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGG < 1:272595/150‑1 ACAAGACGGATCTTTGCCGGGTCGGGATCAAGGCCTGGCTGCGAGCCGCTCGCCTCGGCCATTACTGCGTCAGCAGCATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTG > 2:299550/1‑130 ACAAGACGGATCTTTGCCGGGTCGGGATCAAGGCCTGGCTGCGAGCCGCTCGCCTCGGCCATTACTGCGTCAGCAGCATCCCAGGTCCTCCAGAGGCATCCCCAGCATGGGGCGACCTCGCCTTGGCCTG < 1:299550/130‑1 CGGATCTTTGCCGGGTCGGGATCAAGGCCTGGCTGCGAGCCGCTCGCCTCGGCCATTACTGCGTCAGCAGCATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGTTCCACCAACAATTGGCGGAGCCAGG < 1:1085073/150‑1 CGGATCTTTGCCGGGTCGGGATCAAGGCCTGGCTGCGAGCCGCTCGCCTCGGCCATTACTGCGTCAGCAGCATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGTTCCACCAACAATTGGCGGAGCCAGG < 1:1084871/150‑1 TGCGAGCCGCTCGCCTCGGCCATTACTGCGTCAGCAGCATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTG < 1:179959/91‑1 TGCGAGCCGCTCGCCTCGGCCATTACTGCGTCAGCAGCATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTG > 2:179959/1‑91 GAGCCGCTCGCCTCGGCCATTACTGCGTCAGCAGCATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGTTCCACCAACAATTGGCGGAGCCAG < 1:1404458/113‑1 GAGCCGCTCGCCTCGGCCATTACTGCGTCAGCAGCATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGTTCCACCAACAATTGGCGGAGCCAG > 2:1404458/1‑113 GAGCCGCTCGCCTCGGCCATTACTGCGTCAGCAGCATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTC > 2:342730/1‑77 GAGCCGCTCGCCTCGGCCATTACTGCGTCAGCAGCATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTC < 1:342730/77‑1 CTGCGTCAGCAGCATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGTTCCACCAACAATTGGCGGAGCCAG < 1:788059/91‑1 CTGCGTCAGCAGCATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGTTCCACCAACAATTGGCGGAGCCAG > 2:788059/1‑91 TCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGTTCCACCAACAATTGGCGGAGCCAGG > 2:1176673/1‑78 TCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGTTCCACCAACAATTGGCGGAGCCAGG < 1:1176673/78‑1 GGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGTTCCACCAACAATTGGCGGAGCCAGGC > 1:637136/1‑74 GGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTGTTCCACCAACAATTGGCGGAGCCAGGC < 2:637136/74‑1 CTTGGCCTGTTCCACCAACAATTGGCGGAGCCAGGCCAAGGCGAGGTCGCCCCATGCTGCGGATGCCTCTGGAGGACCTGGGATGCTACTGACGCAGTAATGG < 1:962946/103‑1 CTTGGCCTGTTCCACCAACAATTGGCGGAGCCAGGCCAAGGCGAGGTCGCCCCATGCTGCGGATGCCTCTGGAGGACCTGGGATGCTACTGACGCAGTAATGG > 2:962946/1‑103 GCCTGTTCCACCAACAATTGGCGGAGCCAGGCCAAGGCGAGGTCGCCCCATGCTGCGGATGCCTCTGGAGGACCTGGGATGCTGCTGACGCAGTAATGGCCGAGGCGAGCGGCTCGCAGCCAGGCCTTGATCCCGACCCGGCAAAGATCC < 1:840219/150‑1 GCCTGTTCCACCAACAATTGGCGGAGCCAGGCCAAGGCGAGGTCGCCCCATGCTGCGGATGCCTCTGGAGGACCTGGGATGCTGCTGACGCAGTAATGGCCGAGGCGAGCGGCTCGCAGCCAGGCCTTGATCCCGACCCGGCAAAGATCC < 1:677013/150‑1 TGTTCCACCAACAATTGGCGGAGCCAGGCCAAGGCGAGGTCGCCCCATGCTGCGGATGCCTCTGGAGGACCTGGGATGCTGCTGACGCAGTAATGGCCGAGGCGAGCGGCTCGCAGCCAGGCCTTGATCC > 2:1518182/1‑130 TGTTCCACCAACAATTGGCGGAGCCAGGCCAAGGCGAGGTCGCCCCATGCTCCGGATGCCTCTGGAGGACCTGGGATGCTGCTGACGCAGTAATGGCCGAGGCGAGCGGCTCGCAGCCAGGCCTTGATCC < 1:1518182/130‑1 CTATGGTGGCCCTGGAGAATACTGGGCACAAGACGGATCTTTGCCGGGTCGGGATCAAGGCCTGGCTGCGAGCCGCTCGCCTCGGCCATTACTGCGTCAGCAGCATCCCAGGTCCTCCAGAGGCATCCGCAGCATGGGGCGACCTCGCCTTGGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3622110‑3622266‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccttggcctgTTCCACCAACAATTGGCGGAGCCAGGCCAAGGCGAGGTCGCCCCATGCTGCGGATGCCTCTGGAGGACCTGGGATGCTGCTGACGCAGTAATGGCCGAGGCGAGCGGCTCGCAGCCAGGCCTTGATCCCGACCCGGCAAAGATCC < NC_002947/3622288‑3622144 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |