| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3697416 = | 55 (0.920) | 6 (0.110) | 6/228 | NT | 10.1% | coding (116/417 nt) | PP_5595 | hypothetical protein |
| ? | NC_002947 | 3697451 = | 54 (0.950) | coding (81/417 nt) | PP_5595 | hypothetical protein | |||||
CTCAGACCTGACGAGGGCCTTGTGCCCTGGAGGTGGAAAATGCGTGTTCCTGCCTTGATGATGATGGTTGCCAGCCTGGCCAGCGGCCAGGTCTGGGCCGAAGCTTGCAATGTGCTGACTCGCTCCTCCAGCGACGCCGTGACGCCGGT‑‑‑GGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3697570‑3697416‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggagcgAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGGCTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGAGCAGGCTTGTCGCGCCGGCGCATGGCTTTG > NC_002947/3697451‑3697599 CTCAGACCTGACGAGGGCCTTGTGCCCTGGAGGTGGAAAATGCGTGTTCCTGCCTTGATGATGATGGTTGCCAGCCTGGCCAGCGGCCAGGTCTGGGCCGAAGCTTGCAATGTGCTGACTCGCTCCTCCAGCGACGCCGTGACGCCGGT‑‑‑G < 2:1021460/150‑1 TTGCCAGCCTGGCCAGCGGCCAGGTCTGGGCCGAAGCTTGCAATGTGCTGACTCGCTCCTCCAGCGACGCCGTGACGCCGGT‑‑‑GGAGCG > 1:1340520/1‑88 TTGCCAGCCTGGCCAGCGGCCAGGTCTGGGCCGAAGCTTGCAATGTGCTGACTCGCTCCTCCAGCGACGCCGTGACGCCGGT‑‑‑GGAGCG < 2:1340520/88‑1 CTCGCTCCTCCAGCGACGCCGTGACGCCGGT‑‑‑GGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGGCTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAG > 2:1311337/1‑150 CCTCCAGCGACGCCGTGACGCCGGT‑‑‑GGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGGCTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGA < 1:1311337/150‑1 CTCCAGCGACGCCGTGACGCCGGTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGGCTGGCAA > 1:36000/1‑86 CTCCAGCGACGCCGTGACGCCGGTGGAGGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGGCTGGCAA < 2:36000/86‑1 CAGCGACGCCGTGACGCCGGT‑‑‑GGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGGCTGGCAACCATCATCATCAAGG < 1:1385500/95‑1 CAGCGACGCCGTGACGCCGGT‑‑‑GGAGCGAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGGCTGGCAACCATCATCATCAAGG > 2:1385500/1‑95 GAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGGCTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGAGCAGGCTTGTCGCGCCGGCGCATGGCTTTG < 1:142443/150‑1 GAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGGCTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGAGCAGGCTTGTCGCGCCGGCGCATGGCTTTG < 1:831145/150‑1 CTCAGACCTGACGAGGGCCTTGTGCCCTGGAGGTGGAAAATGCGTGTTCCTGCCTTGATGATGATGGTTGCCAGCCTGGCCAGCGGCCAGGTCTGGGCCGAAGCTTGCAATGTGCTGACTCGCTCCTCCAGCGACGCCGTGACGCCGGT‑‑‑GGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3697570‑3697416‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggagcgAGTCAGCACATTGCAAGCTTCGGCCCAGACCTGGCCGCTGGCCAGGCTGGCAACCATCATCATCAAGGCAGGAACACGCATTTTCCACCTCCAGGGCACAAGGCCCTCGTCAGGTCTGAGCAGGCTTGTCGCGCCGGCGCATGGCTTTG > NC_002947/3697451‑3697599 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |