| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3866633 | 58 (0.970) | 6 (0.110) | 6/226 | NT | 10.6% | coding (289/1020 nt) | PP_3415 | LacI family transcriptional regulator |
| ? | NC_002947 | = 3866641 | 47 (0.830) | coding (281/1020 nt) | PP_3415 | LacI family transcriptional regulator | |||||
CTGGCAACCAGCATCTGCCGGGCAGCATCGCTGCGCTCGAAGCCGGTCAGCAAAATGCCGCAGGGCTGATAGGCCAGGTAATTGCGGATCAGGTTCTCTTCTTCGGCAAGGTCGTAATGATAGTTGCCGATCAGCACCTCTAGCCCACGAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3866482‑3866633‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacgaggTCATGCGCCCTCGTGGGCTAGAGGTGCTGATCGGCAACTATCATTACGACCTTGCCGAAGAAGAGAACCTGATCCGCAATTACCTGGCCTATCAGCCCTGCGGCATTTTGCTGACCGGCTTCGAGCGCAGCGATGCTGCCCGGCAGAT < NC_002947/3866641‑3866494 CTGGCAACCAGCATCTGCCGGGCAGCATCGCTGCGCTCGAAGCCGGTCAGCAAAATGCCGCAGGGCTGATAGGCCAGGTAATTGCGGATCAGGTTCTCTTCTTCGGCAAGGTCGTAATGATAGTTGCCGATCAGCACCTCTAGCCCACGA < 1:902014/150‑1 GGCAACCAGCATCTGCCGGGCAGCATCGCTGCGCTCGAAGCCGGTCAGCAAAATGCCGCAGGGCTGATAGGCCAGGTAATTGCGGATCAGGTTCTCTTCTTCGGCAAGGTCGTAATGATAGTTGCCGATCAGCACCTCTAGCCCACGAGG < 1:402323/150‑1 GGCAACCAGCATCTGCCGGGCAGCATCGCTGCGCTCGAAGCCGGTCAGCAAAATGCCGCAGGGCTGATAGGCCAGGTAATTGCGGATCAGGTTCTCTTCTTCGGCAAGGTCGTAATGATAGTTGCCGATCAGCACCTCTAGCCCACGAGG < 2:1068579/150‑1 ATCTGCCGGGCAGCATCGCTGCGCTCGAAGCCGGTCAGCAAAATGCCGCAGGGCTGATAGGCCAGGTAATTGCGGATCAGGTTCTCTTCTTCGGCAAGGTCGTAATGATAGTTGCCGATCAGCACCTCTAGCACACGAGGTCATGCGCCC > 2:1499930/1‑150 CGGGCAGCATCGCTGCGCTCGAAGCCGGTCAGCAAAATGCCGCAGGGCTGATAGGCCAGGTAATTGCGGATCAGGTTCTCTTCTTCGGCAAGGTCGTAATGATAGTTGCCGATCAGCACCTCTAGCCCACGAGGTCATGCGCCCTCGTGG < 1:1499930/150‑1 TTCGGCAAGGTCGTAATGATAGTTGCCGATCAGCACCTCTAGCCCACGAGGTCATGCGCCCTCGTGGGCTAGA > 1:388985/1‑73 TTCGGCAAGGTCGTAATGATAGTTGCCGATCAGCACCTCTAGCCCACGAGGTCATGCGCCCTCGTGGGCTAGA < 2:388985/73‑1 GCAAGGTCGTAATGATAGTTGCCGATCAGCACCTCTAGCCCACGAGGTCATGCGCCCTCGT < 1:1292703/61‑1 GCAAGGTCGTAATGATAGTTGCCGATCAGCACCTCTAGCCCACGAGGTCATGCGCCCTCGT > 2:1292703/1‑61 ACGAGGTCATGCGCCCTCGTGGGCTAGAGGTGCTGATCGGCAACTATCATTACGACCTTGCCGAAGAAGAGAACCTGATCCGCAATTACCTGGCCTATCAGCCCTGCGGCATTTTGCTGACCGGCTTCGAGCGCAGCGATGCTGCCCGGC < 1:865676/150‑1 ACGAGGTCATGCGCCCTCGTGGGCTAGAGGTGCTGATCGGCAACTATCATTACGACCTTGCCGAAGAAGAGAACCTGATCCGCAATTACCTGGCCTATCAGCCCTGCGGCATTTTGCTGACCGGCTTCGAGCGCAGCGATGCTGCCCGGC > 2:1489133/1‑150 GGTCATGCGCCCTCGTGGGCTAGAGGTGCTGATCGGCAACTATCATTACGACCTTGCCGAAGAAGAGAACCTGATCCGCAATTACCTGGCCTATCAGCCCTGCGGCATTTTGCTGACCGGCTTCGAGCGCAGCGATGCTGCCCGGCAGAT < 1:1489133/150‑1 CTGGCAACCAGCATCTGCCGGGCAGCATCGCTGCGCTCGAAGCCGGTCAGCAAAATGCCGCAGGGCTGATAGGCCAGGTAATTGCGGATCAGGTTCTCTTCTTCGGCAAGGTCGTAATGATAGTTGCCGATCAGCACCTCTAGCCCACGAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3866482‑3866633‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacgaggTCATGCGCCCTCGTGGGCTAGAGGTGCTGATCGGCAACTATCATTACGACCTTGCCGAAGAAGAGAACCTGATCCGCAATTACCTGGCCTATCAGCCCTGCGGCATTTTGCTGACCGGCTTCGAGCGCAGCGATGCTGCCCGGCAGAT < NC_002947/3866641‑3866494 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |