New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 392841466 (1.100)14 (0.260) 10/212 NT 19.1% intergenic (+46/‑94) peaE/PP_3464 phenylacetaldehyde dehydrogenase/hypothetical protein
?NC_002947 = 3928431 60 (1.130)intergenic (+63/‑77) peaE/PP_3464 phenylacetaldehyde dehydrogenase/hypothetical protein

GCTGGACCCGGCGCTGCCGTTTGGTGGCTACAAGATGTCTGGCGTTGGTCGTGAGATGGGTTCAGCGGCCATCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3928254‑3928414
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacccgctcctacaGGGCATGTGATACCTGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGAAAAAGGATCAGAGCTTGATCAACACCGATTTCAGCTCCGTGTAATGCTCGATGGCCGCTGAACCCATCTCACGACCAACGCCAG  <  NC_002947/3928431‑3928292
                                                                                                                                                                                                                                                                                                             
GCTGGACCCGGCGCTGCCGTTTGGTGGCTACAAGATGTCTGGCGTTGGTCGTGAGATGGGTTCAGCGGCCATCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAAC                                                                                                                                                         <  1:1592210/150‑1
       CCGGCGCTGCCGTTTGGTGGCTACAAGATGTCTGGCGTTGGTCGTGAGATGGGTTCAGCGTCCATCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTTTACCCGCgaa                                                                                                                                                  <  1:431192/150‑4
       CCGGCGCTGCCGTTTGGTGGCTACAAGATGTCTGGCGTTGGTCGTGAGATGGGTTCAGCGGCCATCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCC                                                                                                                                                  <  2:715317/150‑1
       CCGGCGCTGCCGTTTGGTGGCTACAAGATGTCTGGCGTTGGTCGTGAGATGGGTTCAGCGGCCATCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCC                                                                                                                                                  <  1:1540727/150‑1
          GCGCTGCCGTGTGGTGGCTACAAGATGTCTGGCGTTGGTCGTGAGATGGGTTCAGCGGCCATCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTTCCGGCCTCTTCGCGGGTTTACCCGCgaagag                                                                                                                                               <  2:445667/150‑7
           CGCTGCCGTTTGGTGGCTACAAGATGTCTGGCGTTGGTCGTGAGATGGGTTCAGCGGCCATCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACA                                                                                                                                              <  2:1192240/150‑1
                            TACAAGATGTCTGGCGTTGGTCGTGAGATGGGTTCAGCGGCCATCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGCATGTGATACCTGG                                                                                                                             >  2:465912/1‑150
                               AAGATGTCTGGCGTTGGTCGTGAGATGGGTTCAGCGGCCATCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACC                                                                                                                                                        <  1:1093272/120‑1
                               AAGATGTCTGGCGTTGGTCGTGAGATGGGTTCAGCGGCCATCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACC                                                                                                                                                        >  2:1093272/1‑120
                                                       ATGGGTTCAGCGGCCATCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGCATGTGATACCTGGTGTAGGAGCGG                                                                                                                  >  2:182249/1‑134
                                                       ATGGGTTCAGCGGCCATCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGCATGTGATACCTGGTGTAGGAGCGG                                                                                                                  <  1:182249/134‑1
                                                           GTTCAGCGGCCATCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGCATGTGATACCTGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCG                                                                                              <  1:465912/150‑1
                                                                                 CACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGCATGTGATACCTGGTGTAGGAGCGGG                                                                                                                 <  2:937771/109‑1
                                                                                 CACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGCATGTGATACCTGGTGTAGGAGCGGG                                                                                                                 >  1:937771/1‑109
                                                                                            AATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGCATGTGATACCTGG                                                                                                                             <  2:1043682/86‑1
                                                                                            AATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGCATGTGATACCTGG                                                                                                                             >  1:1043682/1‑86
                                                                                                                            CTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGCATGTGATACCTGGTGTAGGAGCG                                                                                                                   <  1:620667/64‑1
                                                                                                                            CTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGCATGTGATACCTGGTGTAGGAGCG                                                                                                                   >  2:620667/1‑64
                                                                                                                             TGTACCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGCATGTGATACCTGGTGTAGGAGCGGGTTTACCCGCG                                                                                                       >  2:1203834/1‑75
                                                                                                                             TGTACCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGCATGTGATACCTGGTGTAGGAGCGGGTTTACCCGCG                                                                                                       <  1:1203834/75‑1
                                                                                                                             TGTACCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGCATGTGATACCTGGTGTAGGAGC                                                                                                                    >  2:1363185/1‑62
                                                                                                                             TGTACCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGCATGTGATACCTGGTGTAGGAGC                                                                                                                    <  1:1363185/62‑1
                                                                                                                                                     CCCGCTCCTACAGGGCATGTGATACCTGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGAAAAAGGATCAGAGCTTGATCAACACCGATTTCAGCTCCGTGTAATGCTCGATGGCCGCTGAACCCATCTCACGACCAACGCC    >  2:1226094/1‑150
                                                                                                                                                     CCCGCTCCTACAGGGCATGTGATACCTGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGAAAAAGGATCAGAGCTTGATCAACACCGATTTCAGCTCCGTGTAATGCTCGATGGCCGCTGAACCCATCTCACGACCAACGCC    >  1:1229368/1‑150
                                                                                                                                                     CCCGCTCCTACAGGGCATGGGATACCTGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGAAAAAGGATCAGAGCTTGATCAACACCGATTTCAGCTCCGTGTAATGCTCGATGGCCGCTGAACCCATCTCACGACCAACGCC    >  1:1526559/1‑150
                                                                                                                                                       CGCTCCTACAGGGCATGTGATACCTGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGAAAAAGGATCAGAGCTTGATCAACACCGATTTCAGCTCCGTGTAATGCTCGATGGCCGCTGAACCCATCTCACGACCAACGCCAG  >  2:662638/1‑150
                                                                                                                                                        GCTCCTACAGGGCATGTGATACCTGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGAAAAAGGATCAGAGCTTGATCAACACCGATTTCAGCTCCGTGTAATGCTCGATGGCCGCTGAACCCATCTCACGACCAACGCC    <  1:62131/147‑1
                                                                                                                                                        GCTCCTACAGGGCATGTGATACCTGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGAAAAAGGATCAGAGCTTGATCAACACCGATTTCAGCTCCGTGTAATGCTCGATGGCCGCTGAACCCATCTCACGACCAACGCC    >  2:62131/1‑147
                                                                                                                                                            CTACAGGGCATGTGATACCTGGTGTAGGAGCGGGTTTACCCGCGAAGAGG                                                                                                 <  1:761191/50‑1
                                                                                                                                                            CTACAGGGCATGTGATACCTGGTGTAGGAGCGGGTTTACCCGCGAAGAGG                                                                                                 >  2:761191/1‑50
                                                                                                                                                                                                                                                                                                             
GCTGGACCCGGCGCTGCCGTTTGGTGGCTACAAGATGTCTGGCGTTGGTCGTGAGATGGGTTCAGCGGCCATCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3928254‑3928414
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacccgctcctacaGGGCATGTGATACCTGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGAAAAAGGATCAGAGCTTGATCAACACCGATTTCAGCTCCGTGTAATGCTCGATGGCCGCTGAACCCATCTCACGACCAACGCCAG  <  NC_002947/3928431‑3928292

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.