New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3952534	65 (1.090)	4 (0.070)	3/230	NT	6.4%	coding (60/657 nt)	PP_3488	Sco1/SenC family protein
	?	NC_002947	= 3952560	54 (0.940)					coding (34/657 nt)	PP_3488	Sco1/SenC family protein

TGCCGTCCTGGTTCAGCAGCGACACATCGGCAAAACGCACACTGGTCTTTTCCTGGTGCGCCGCCGGGGGCTGCCCGGCATGGCCGTCATGCGCGTGACCGGCGTGGGCCATGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3952419‑3952534 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccCTGAGCCTGGCATTCGCCAGCCACCTGGCCATGGCCCACGCCGGTCACGCGCATGACGGCCATGCCGGGCAGCCCCCGGCGGCGCACCAGGAAAAGACCAGTGTGCGTTTTGCCGATGTGTCGCTGCTGAACCAGGACGGCATGCCGG  <  NC_002947/3952560‑3952413                                                                                                                                                                                                                                                                          TGCCGTCCTGGTTCAGCAGCGACACATCGGCAAAACGCACACTGGTCTTTTCCTGGTGCGCCGCCGGGGGCTGCCCGGCATGGCCGTCATGCGCGTGACCGGCGTGGGCCATGGCCCTGAGCCTGGCATTCGCCAGCCACCTGGCCATGG                                                                                                                    <  2:929310/150‑1   CCGTCCTGGTTCAGCAGCGACACATCGGCAAAACGCACACTGGTCTTTTCCTGGTGCGCCGCCGGGGGCTGCCCGGCATGGCCGTCATGCGCGTGACCGGCGTGGGCCATGGCCCTGAGCCTGGCATTCGCCAGCCACCTGGCCATGGCC                                                                                                                  <  1:286049/150‑1                GCAGCGACACATCGGCAAAACGCACACTGGTCTTTTCCTGGTGCGCCGCCGGGGGCTGCCCGGCATGGCCGTCATGCGCGTGACCGGCGTGGGCCATGGCCCTGAGCCTGGCATTCGCCAGCCACCTGGCCATGG                                                                                                                    >  1:1431253/1‑135                GCAGCGACACATCGGCAAAACGCACACTGGTCTTTTCCTGGTGCGCCGCCGGGGGCTGCCCGGCATGGCCGTCATGCGCGTGACCGGCGTGGGCCATGGCCCTGAGCCTGGCATTCGCCAGCCACCTGGCCATGG                                                                                                                    <  2:1431253/135‑1                                                                                                                   CCCTGAGCCTGGCATTCGCCAGCCACCTTGCCATGGCCCACGCCGGTCACGCGCATGACGGCCATGCCGGGCAGCCCCCGGCGGCGCACCAGGAAACGACCAGTGTGCGTTTTGCCGATGCGTCGCTGCTGAACCAGGACGGCCTGCCGG  >  2:114446/1‑150                                                                                                                   CCCTGAGCCTGGCATTCGCCAGCCACCTGGCCATGGCCCACGCCGGTCACGCGCATGACGGCCATG                                                                                      <  1:1576822/66‑1                                                                                                                   CCCTGAGCCTGGCATTCGCCAGCCACCTGGCCATGGCCCACGCCGGTCACGCGCATGACGGCCATG                                                                                      >  2:1576822/1‑66                                                                                                                                                                                                                                                                          TGCCGTCCTGGTTCAGCAGCGACACATCGGCAAAACGCACACTGGTCTTTTCCTGGTGCGCCGCCGGGGGCTGCCCGGCATGGCCGTCATGCGCGTGACCGGCGTGGGCCATGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3952419‑3952534 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccCTGAGCCTGGCATTCGCCAGCCACCTGGCCATGGCCCACGCCGGTCACGCGCATGACGGCCATGCCGGGCAGCCCCCGGCGGCGCACCAGGAAAAGACCAGTGTGCGTTTTGCCGATGTGTCGCTGCTGAACCAGGACGGCATGCCGG  <  NC_002947/3952560‑3952413

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.