| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4266591 | 48 (0.800) | 5 (0.100) | 5/206 | NT | 9.0% | intergenic (‑89/+57) | PP_3738/galP‑IV | transcriptional regulator VanR/porin‑like protein |
| ? | NC_002947 | = 4266628 | 60 (1.170) | intergenic (‑126/+20) | PP_3738/galP‑IV | transcriptional regulator VanR/porin‑like protein | |||||
CTCGCCGGCCGCCAACTCGCCTGAAGCGATCATCTTGCGCAACGCAACCAGCACCATCTGACCGGGTTTGCTCATCCAGGC‑GACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4266428‑4266591‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggttcacccgcgaaCACCGGCGCAGCCGGTGCCATGTTCCGCGTTGCCTGCTTCGCGGGTGAACCCGCTCCTACAACAGGCCTGCAGCAACCCCTCGGCTTGCGCTAAGATGCCCGCTCATGTCTTTGGAAGTCGCCTGGATGAGCAAACCCGGTC < NC_002947/4266628‑4266487 CTCGCCGGCCGCCAACTCGCCTGAAGCGATCATCTTGCGCAACGCAACCAGCACCATCTGACCGGGTTTTCTCATCCAGGC‑GACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCG > 2:1337979/1‑150CTCGCCGGCCGCCAACTCGCCTGAAGCGATCATCTTGCGCAACGCAACCAGCACCATCTGACCGGGTTTGCTCATCCAGGC‑GACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCG > 1:510820/1‑150 TCGCCGGCCGCCAACTCGCCTGAAGCGATCATCTTGCGCAACGCAACCAGCACCATCTGACCGGGTTTGCTCATCCAGGC‑GACTTCCAAAGACATGAGCGGGCATCTTAGCGTAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGG < 1:707855/150‑1 CCGCCAACTCGCCTGAAGCGATCATCTTGCGCAACGCAACCAGCACCATCTGACCGGGTTTGCTCATCCAGGC‑GACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGG < 2:606629/144‑1 CCGCCAACTCGCCTGAAGCGATCATCTTGCGCAACGCAACCAGCACCATCTGACCGGGTTTGCTCATCCAGGC‑GACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGG > 1:606629/1‑144 CGCCAACTCGCCTGAAGCGATCATCTTGCGCAACGCAACCAGCACCATCTGACCGGGTTTGCTCATCCAGGC‑GACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCC < 2:510820/150‑1 CGCCAACTCGCCTGAAGCGATCATCTTGCGCAACGCAACCAGCACAATCTAACCGAGATAGCTCATCAAAGCACACGT‑CAGAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCC > 1:1433961/1‑150 AACTCGCCTGAAGCGATCATCTTGCGCAACGCAACCAGCACCATCTGACCGGGTTTGCTCATCCAGGC‑GACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGA > 2:911068/1‑150 AACTCGCCTGAAGCGATCATCTTGCGCAACGCAACCAGCACCATCTGACCGGGTTTGCTCATCCAGGC‑GACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGG < 1:705557/138‑1 AACTCGCCTGAAGCGATCATCTTGCGCAACGCAACCAGCACCATCTGACCGGGTTTGCTCATCCAGGC‑GACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGG > 2:705557/1‑138 AAGCGATCATCTTGCGCAACGCAACCAGCACCATCTGACCGGGTTTGCTCATCCAGGC‑GACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTGAACCCGCtc > 2:1527916/1‑138 AAGCGATCATCTTGCGCAACGCAACCAGCACCATCTGACCGGGTTTGCTCATCCAGGC‑GACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTGAACCCGCtc < 1:1527916/140‑3 CTTGCGCAACGCAACCAGCACCATCTGACCGGGTTTGCTCATCCAGGC‑GACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACC < 2:1605186/125‑1 CTTGCGCAACGCAACCAGCACCATCTGACCGGGTTTGCTCATCCAGGC‑GACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACC > 1:1605186/1‑125 AACCAGCACCATCTGACCGGGTTTGCTCATCCAGGC‑GACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAACACCGGCGCAGCCGGTGCCATGTTCCGCGTT > 1:1345282/1‑150 TGACCGGGTTTGCTCATCCAGGC‑GACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAACACCGTCGCAGCCGGTGCCATGTTCCGCGTTGCCTGCTTCGCGG < 1:574284/150‑1 GACCGGGTTTGCTCATCCAGGC‑GACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAACACCGGCGCAGCCGGTGCCATGTTCCGCGTTGCCTGCTTCGCGGG < 2:1345282/150‑1 TTGCTGCAGGCCTGTTGTAGGGGCGGGTTCACCCGCGAACACCGGCGCAGCCGGTGCCATGTTCCGCGTTGCCTGCTTCGCGGGT < 1:1014130/85‑1 TTGCTGCAGGCCTGTTGTAGGGGCGGGTTCACCCGCGAACACCGGCGCAGCCGGTGCCATGTTCCGCGTTGCCTGCTTCGCGGGT > 2:1014130/1‑85 CCCGCGAACACCGGCGCAGCCGGTGCCATGTTCCGCGTTGCCTGCTTCGCGGGTGAACCCGCTCCTACAACAGGCCTGCAGCAACCCCTCGGCTTGCGCTAAGATGCCCGCTCATGTCTTTGGAAGTCGCCTGGATGAGCAAACCCGGTC < 1:632243/150‑1 CCCGCGAACACCGGCGCAGCCGGTGCCATGTTCCGCGTTGCCTGCTTCGCGGGTGAACCCGCTCCTACAACAGGCCTGCAGCAACCCCTCGCCTTGCGCTAAGATGCCCGCTCATGTCTTTGGAAGTCGCCTGGATGAGCAAACCCGGTC > 1:625881/1‑150 ACACCGGCGCAGCCGGTGCCATGTTCCGCGTTGCCTGCTTC > 2:1615604/1‑41 ACACCGGCGCAGCCGGTGCCATGTTCCGCGTTGCCTGCTTC < 1:1615604/41‑1 CTCGCCGGCCGCCAACTCGCCTGAAGCGATCATCTTGCGCAACGCAACCAGCACCATCTGACCGGGTTTGCTCATCCAGGC‑GACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4266428‑4266591‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggttcacccgcgaaCACCGGCGCAGCCGGTGCCATGTTCCGCGTTGCCTGCTTCGCGGGTGAACCCGCTCCTACAACAGGCCTGCAGCAACCCCTCGGCTTGCGCTAAGATGCCCGCTCATGTCTTTGGAAGTCGCCTGGATGAGCAAACCCGGTC < NC_002947/4266628‑4266487 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |