| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4282655 = | 51 (0.850) | 4 (0.070) | 4/230 | NT | 7.4% | coding (619/1089 nt) | PP_3753 | AraC family transcriptional regulator |
| ? | NC_002947 | 4282678 = | 51 (0.890) | coding (596/1089 nt) | PP_3753 | AraC family transcriptional regulator | |||||
ACCGCACGGAGCTCGCGGTGTCGCGCCCGGCCCAGGAGGACGACTTGCTGCTGTGGGGGCCGGACCTGCGGCTGGGCAGCGGACGCACCGAGGTGGAGTTCGACAGCGCCTACCTGCGCCTGCCGG‑TGGTGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4282789‑4282655‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaggTAGGCGCTGTCGAACTCCACCTCGGTGCGTCCGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCGCGACACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCCGCCCGGCCAGCCAGCACA > NC_002947/4282678‑4282822 ACCGCACGGAGCTCGCGGTGTCGCGCCCGGCCCAGGAGGACGACTTGCTGCTGTGGGGGCCGGACCTGCGGCTGGGCAGCGGACGCACCGAGGTGGAGTTCGACAGCGCCTACCTGCACC‑ACCGGCAGGCGCAGGTAGGCGCTGTCGAAC < 1:561113/150‑1ACCGCACGGAGCTCGCGGTGTCGCGCCCGGCCCAGGAGGACGACTTGCTGCTGTGGGGGCCGGACCTGCGGCTGGGCAGCGGACGCACCGAGGTGGAGTTCGACAGCGCCTACCTGCACC‑ACCGGCAGGCGCAGGTAGGCGCTGTCGAAC > 2:561113/1‑150 CTACCTGCGCCTGCCGG‑TGGTGCAGGTAGGCGCTGTCGAACTCCACCTCGGTGCGTCCGCTGCCCAGCCGCAGGTCCGGCCCC < 1:1204581/83‑1 CTACCTGCGCCTGCCGG‑TGGTGCAGGTAGGCGCTGTCGAACTCCACCTCGGTGCGTCCGCTGCCCAGCCGCAGGTCCGGCCCC > 2:1204581/1‑83 GCAGGTAGGCGCTGTCGAACTCCACCTCGGTGCGTCCGCTGCCCAGCCTCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCGCGACACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCCGCCCGGCCAGCCAGCACA > 1:1270870/1‑150 GCAGGTAGGCGCTGTCGAACTCCACCTCGGTGCGTCCGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCGCGACACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCCGCCCGGCCAGCCAGCACA > 1:1006892/1‑150 ACCGCACGGAGCTCGCGGTGTCGCGCCCGGCCCAGGAGGACGACTTGCTGCTGTGGGGGCCGGACCTGCGGCTGGGCAGCGGACGCACCGAGGTGGAGTTCGACAGCGCCTACCTGCGCCTGCCGG‑TGGTGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4282789‑4282655‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaggTAGGCGCTGTCGAACTCCACCTCGGTGCGTCCGCTGCCCAGCCGCAGGTCCGGCCCCCACAGCAGCAAGTCGTCCTCCTGGGCCGGGCGCGACACCGCGAGCTCCGTGCGGTCGATGGCAATCCGCCGCCCGGCCAGCCAGCACA > NC_002947/4282678‑4282822 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |